Lindsay Rutter
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/bigPint |
| git_branch: RELEASE_3_13 |
| git_last_commit: d2b72f4 |
| git_last_commit_date: 2021-05-19 12:40:30 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the bigPint package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bigPint.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 152/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bigPint 1.8.0 (landing page) Lindsay Rutter
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: bigPint |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bigPint.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings bigPint_1.8.0.tar.gz |
| StartedAt: 2021-10-14 20:04:47 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 20:11:16 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 388.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: bigPint.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bigPint.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings bigPint_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/bigPint.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bigPint/DESCRIPTION' ... OK
* this is package 'bigPint' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bigPint' can be installed ... OK
* checking installed package size ... NOTE
installed size is 22.7Mb
sub-directories of 1Mb or more:
data 11.0Mb
help 3.2Mb
shiny-dashboards 5.0Mb
shiny-examples 3.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 11.0 MB without LazyDataCompression set
See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotSM 44.49 0.30 45.01
plotClusters 13.36 0.84 14.22
plotLitre 3.94 1.41 5.45
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotSM 46.03 0.44 46.47
plotClusters 15.84 0.50 16.34
plotLitre 4.56 1.25 5.83
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/bigPint.Rcheck/00check.log'
for details.
bigPint.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/bigPint_1.8.0.tar.gz && rm -rf bigPint.buildbin-libdir && mkdir bigPint.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bigPint.buildbin-libdir bigPint_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL bigPint_1.8.0.zip && rm bigPint_1.8.0.tar.gz bigPint_1.8.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 56.8M 1 850k 0 0 1406k 0 0:00:41 --:--:-- 0:00:41 1405k
5 56.8M 5 3432k 0 0 2103k 0 0:00:27 0:00:01 0:00:26 2103k
11 56.8M 11 6720k 0 0 2575k 0 0:00:22 0:00:02 0:00:20 2575k
18 56.8M 18 10.6M 0 0 3018k 0 0:00:19 0:00:03 0:00:16 3018k
24 56.8M 24 13.8M 0 0 3060k 0 0:00:19 0:00:04 0:00:15 3060k
29 56.8M 29 16.9M 0 0 3094k 0 0:00:18 0:00:05 0:00:13 3298k
37 56.8M 37 21.0M 0 0 3263k 0 0:00:17 0:00:06 0:00:11 3643k
39 56.8M 39 22.6M 0 0 3044k 0 0:00:19 0:00:07 0:00:12 3289k
39 56.8M 39 22.6M 0 0 2687k 0 0:00:21 0:00:08 0:00:13 2448k
42 56.8M 42 24.2M 0 0 2582k 0 0:00:22 0:00:09 0:00:13 2137k
48 56.8M 48 27.4M 0 0 2654k 0 0:00:21 0:00:10 0:00:11 2157k
55 56.8M 55 31.6M 0 0 2796k 0 0:00:20 0:00:11 0:00:09 2177k
64 56.8M 64 36.7M 0 0 2983k 0 0:00:19 0:00:12 0:00:07 2891k
75 56.8M 75 42.7M 0 0 3213k 0 0:00:18 0:00:13 0:00:05 4127k
82 56.8M 82 46.6M 0 0 3270k 0 0:00:17 0:00:14 0:00:03 4592k
82 56.8M 82 46.7M 0 0 3058k 0 0:00:19 0:00:15 0:00:04 3911k
85 56.8M 85 48.7M 0 0 3000k 0 0:00:19 0:00:16 0:00:03 3471k
93 56.8M 93 53.0M 0 0 3079k 0 0:00:18 0:00:17 0:00:01 3321k
100 56.8M 100 56.8M 0 0 3168k 0 0:00:18 0:00:18 --:--:-- 3040k
install for i386
* installing *source* package 'bigPint' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'bigPint'
finding HTML links ... done
bigPint html
convertSEPair html
convertSESubsetGenes html
plotClusters html
plotLitre html
plotLitreApp html
plotPCP html
plotPCPApp html
plotSM html
plotSMApp html
plotVolcano html
plotVolcanoApp html
se_soybean_cn_sub html
se_soybean_ir_sub html
soybean_cn html
soybean_cn_metrics html
soybean_cn_sub html
soybean_cn_sub_metrics html
soybean_ir html
soybean_ir_metrics html
soybean_ir_sub html
soybean_ir_sub_metrics html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'bigPint' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bigPint' as bigPint_1.8.0.zip
* DONE (bigPint)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'bigPint' successfully unpacked and MD5 sums checked
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bigPint.Rcheck/tests_i386/runTests.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("bigPint")
RUNIT TEST PROTOCOL -- Thu Oct 14 20:10:59 2021
***********************************************
Number of test functions: 5
Number of errors: 0
Number of failures: 0
1 Test Suite :
bigPint RUnit Tests - 5 test functions, 0 errors, 0 failures
Number of test functions: 5
Number of errors: 0
Number of failures: 0
Warning messages:
1: In xtfrm.data.frame(x) : cannot xtfrm data frames
2: In xtfrm.data.frame(x) : cannot xtfrm data frames
3: In xtfrm.data.frame(x) : cannot xtfrm data frames
4: In xtfrm.data.frame(x) : cannot xtfrm data frames
5: In xtfrm.data.frame(x) : cannot xtfrm data frames
6: In xtfrm.data.frame(x) : cannot xtfrm data frames
7: In xtfrm.data.frame(x) : cannot xtfrm data frames
8: In xtfrm.data.frame(x) : cannot xtfrm data frames
>
> proc.time()
user system elapsed
6.81 0.51 7.37
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bigPint.Rcheck/tests_x64/runTests.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("bigPint")
RUNIT TEST PROTOCOL -- Thu Oct 14 20:11:08 2021
***********************************************
Number of test functions: 5
Number of errors: 0
Number of failures: 0
1 Test Suite :
bigPint RUnit Tests - 5 test functions, 0 errors, 0 failures
Number of test functions: 5
Number of errors: 0
Number of failures: 0
Warning messages:
1: In xtfrm.data.frame(x) : cannot xtfrm data frames
2: In xtfrm.data.frame(x) : cannot xtfrm data frames
3: In xtfrm.data.frame(x) : cannot xtfrm data frames
4: In xtfrm.data.frame(x) : cannot xtfrm data frames
5: In xtfrm.data.frame(x) : cannot xtfrm data frames
6: In xtfrm.data.frame(x) : cannot xtfrm data frames
7: In xtfrm.data.frame(x) : cannot xtfrm data frames
8: In xtfrm.data.frame(x) : cannot xtfrm data frames
>
> proc.time()
user system elapsed
7.82 0.43 8.25
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bigPint.Rcheck/examples_i386/bigPint-Ex.timings
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bigPint.Rcheck/examples_x64/bigPint-Ex.timings
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