| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the SWATH2stats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SWATH2stats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1877/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SWATH2stats 1.22.0 (landing page) Peter Blattmann
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SWATH2stats |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SWATH2stats_1.22.0.tar.gz && rm -rf SWATH2stats.buildbin-libdir && mkdir SWATH2stats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SWATH2stats.buildbin-libdir SWATH2stats_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SWATH2stats_1.22.0.zip && rm SWATH2stats_1.22.0.tar.gz SWATH2stats_1.22.0.zip |
| StartedAt: 2021-10-14 08:26:20 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:27:41 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 80.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SWATH2stats_1.22.0.tar.gz && rm -rf SWATH2stats.buildbin-libdir && mkdir SWATH2stats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SWATH2stats.buildbin-libdir SWATH2stats_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SWATH2stats_1.22.0.zip && rm SWATH2stats_1.22.0.tar.gz SWATH2stats_1.22.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
29 2668k 29 792k 0 0 869k 0 0:00:03 --:--:-- 0:00:03 869k
63 2668k 63 1686k 0 0 885k 0 0:00:03 0:00:01 0:00:02 885k
100 2668k 100 2668k 0 0 1066k 0 0:00:02 0:00:02 --:--:-- 1067k
install for i386
* installing *source* package 'SWATH2stats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SWATH2stats'
finding HTML links ... done
JPP_update html
MSstats_data html
OpenSWATH_data html
Spyogenes html
Study_design html
add_genesymbol html
assess_decoy_rate html
assess_fdr_byrun html
assess_fdr_overall html
convert4MSstats html
convert4PECA html
convert4aLFQ html
convert4mapDIA html
convert4pythonscript html
convert_protein_ids html
count_analytes html
disaggregate html
filter_all_peptides html
filter_mscore html
filter_mscore_condition html
filter_mscore_fdr html
filter_mscore_freqobs html
filter_on_max_peptides html
filter_on_min_peptides html
filter_proteotypic_peptides html
import_data html
load_mart html
mscore4assayfdr html
mscore4pepfdr html
mscore4protfdr html
plot.fdr_cube html
plot.fdr_table html
plot_correlation_between_samples html
plot_variation html
plot_variation_vs_total html
reduce_OpenSWATH_output html
removeDecoyProteins html
rmDecoyProt html
sample_annotation html
transform_MSstats_OpenSWATH html
unifyProteinGroupLabels html
validate_columns html
write_matrix_peptides html
write_matrix_proteins html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SWATH2stats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SWATH2stats' as SWATH2stats_1.22.0.zip
* DONE (SWATH2stats)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SWATH2stats' successfully unpacked and MD5 sums checked