| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:48 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the PrecisionTrialDrawer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PrecisionTrialDrawer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1426/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PrecisionTrialDrawer 1.8.0 (landing page) Giorgio Melloni
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: PrecisionTrialDrawer |
| Version: 1.8.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PrecisionTrialDrawer_1.8.0.tar.gz |
| StartedAt: 2021-10-14 11:05:12 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:08:57 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 224.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrecisionTrialDrawer.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PrecisionTrialDrawer_1.8.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/PrecisionTrialDrawer.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PrecisionTrialDrawer’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
newCancerPanel 4.578 0.100 39.023
panelDesigner 3.873 0.063 31.001
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
| name | user | system | elapsed | |
| CancerPanel-class | 0.002 | 0.000 | 0.001 | |
| PrecisionTrialDrawer-package | 0.167 | 0.008 | 0.176 | |
| appendRepo | 0.349 | 0.004 | 0.354 | |
| coocMutexPlot | 1.91 | 0.02 | 1.93 | |
| coveragePlot | 0.157 | 0.004 | 0.160 | |
| coverageStackPlot | 0.181 | 0.020 | 0.201 | |
| cpArguments | 0.009 | 0.004 | 0.013 | |
| cpData | 0.016 | 0.000 | 0.015 | |
| cpDataSubset | 0.006 | 0.004 | 0.009 | |
| cpDesign | 0.018 | 0.000 | 0.019 | |
| cpFreq | 0.187 | 0.032 | 0.220 | |
| cpObj | 0.152 | 0.012 | 0.164 | |
| cpObj2 | 0.034 | 0.004 | 0.037 | |
| dataExtractor | 0.309 | 0.012 | 0.322 | |
| filterFusions | 0.355 | 0.004 | 0.358 | |
| filterMutations | 0.804 | 0.004 | 0.808 | |
| getAlterations | 0.199 | 0.004 | 0.490 | |
| newCancerPanel | 4.578 | 0.100 | 39.023 | |
| panelDesigner | 3.873 | 0.063 | 31.001 | |
| panelOptimizer | 0.001 | 0.000 | 0.000 | |
| panelexample | 0.005 | 0.000 | 0.005 | |
| propPowerSampleSize | 0.605 | 0.008 | 0.613 | |
| saturationPlot | 1.233 | 0.016 | 1.248 | |
| showCancerStudy | 0.023 | 0.000 | 0.058 | |
| showTumorType | 0.033 | 0.004 | 0.078 | |
| subsetAlterations | 0.383 | 0.019 | 0.402 | |
| survPowerSampleSize | 0.499 | 0.000 | 0.499 | |
| survPowerSampleSize1Arm | 0.576 | 0.008 | 0.584 | |