Tiago Lubiana
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/FCBF |
| git_branch: RELEASE_3_13 |
| git_last_commit: 3eb0809 |
| git_last_commit_date: 2021-05-19 12:38:33 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:04 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the FCBF package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FCBF.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 620/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FCBF 2.0.0 (landing page) Tiago Lubiana
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: FCBF |
| Version: 2.0.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FCBF.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings FCBF_2.0.0.tar.gz |
| StartedAt: 2021-10-14 23:03:35 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 23:09:59 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 384.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: FCBF.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FCBF.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings FCBF_2.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/FCBF.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FCBF/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FCBF' version '2.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FCBF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fcbf 26.06 0.31 26.69
scDengue 16.93 0.04 16.97
get_su_for_feature_table_and_vector 9.79 0.13 9.95
su_plot 9.62 0.07 9.69
get_ig_for_feature_table_and_vector 9.30 0.06 9.36
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fcbf 28.68 0.14 28.81
scDengue 17.92 0.12 18.05
su_plot 10.36 0.03 10.39
get_ig_for_feature_table_and_vector 9.82 0.10 9.90
get_su_for_feature_table_and_vector 9.51 0.04 9.56
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
FCBF.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/FCBF_2.0.0.tar.gz && rm -rf FCBF.buildbin-libdir && mkdir FCBF.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FCBF.buildbin-libdir FCBF_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FCBF_2.0.0.zip && rm FCBF_2.0.0.tar.gz FCBF_2.0.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
75 2670k 75 2023k 0 0 2230k 0 0:00:01 --:--:-- 0:00:01 2231k
100 2670k 100 2670k 0 0 2444k 0 0:00:01 0:00:01 --:--:-- 2445k
install for i386
* installing *source* package 'FCBF' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'FCBF'
finding HTML links ... done
FCBF-deprecated html
IG-deprecated html
SU-deprecated html
discretize_exprs html
discretize_exprs_supervised html
discretize_gene_supervised html
fcbf html
get_IG_for_vector_pair html
get_SU_for_vector_pair html
get_ig_for_feature_table_and_vector html
get_su-deprecated html
get_su_for_feature_table_and_vector html
scDengue html
su_plot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FCBF' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FCBF' as FCBF_2.0.0.zip
* DONE (FCBF)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'FCBF' successfully unpacked and MD5 sums checked
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FCBF.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(FCBF)
>
> test_check("FCBF")
[1] "Number of features features = 8"
[1] "Number of prospective features = 7"
[1] "Number of final features = 2"
[1] "Number of features features = 8"
[1] "Number of prospective features = 1"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
>
> proc.time()
user system elapsed
6.92 0.65 7.56
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FCBF.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(FCBF)
>
> test_check("FCBF")
[1] "Number of features features = 8"
[1] "Number of prospective features = 7"
[1] "Number of final features = 2"
[1] "Number of features features = 8"
[1] "Number of prospective features = 1"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
>
> proc.time()
user system elapsed
6.79 0.37 7.15
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FCBF.Rcheck/examples_i386/FCBF-Ex.timings
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FCBF.Rcheck/examples_x64/FCBF-Ex.timings
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