| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:43 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the sparseMatrixStats package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1755/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sparseMatrixStats 1.2.1 (landing page) Constantin Ahlmann-Eltze
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sparseMatrixStats |
| Version: 1.2.1 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sparseMatrixStats.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings sparseMatrixStats_1.2.1.tar.gz |
| StartedAt: 2021-05-06 07:09:49 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 07:11:31 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 101.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sparseMatrixStats.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sparseMatrixStats.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings sparseMatrixStats_1.2.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/sparseMatrixStats.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'sparseMatrixStats/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'sparseMatrixStats' version '1.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sparseMatrixStats' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/sparseMatrixStats/libs/i386/sparseMatrixStats.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/sparseMatrixStats/libs/x64/sparseMatrixStats.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/sparseMatrixStats.Rcheck/00check.log' for details.
sparseMatrixStats.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/sparseMatrixStats_1.2.1.tar.gz && rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL sparseMatrixStats_1.2.1.zip && rm sparseMatrixStats_1.2.1.tar.gz sparseMatrixStats_1.2.1.zip
###
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install for i386
* installing *source* package 'sparseMatrixStats' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:85:80: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)> [with auto:15 = SkipNAVectorSubsetView<14>; auto:16 = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:378:4: required from here
methods.cpp:351:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)> [with auto:15 = VectorSubsetView<14>; auto:16 = VectorSubsetView<13>]':
methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:378:4: required from here
methods.cpp:351:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:226:27: required from 'dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)> [with auto:5 = SkipNAVectorSubsetView<14>; auto:6 = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:227:4: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c row_methods.cpp -o row_methods.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/sparseMatrixStats.buildbin-libdir/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sparseMatrixStats'
finding HTML links ... done
colAlls-xgCMatrix-method html
colAnyNAs-xgCMatrix-method html
colAnys-xgCMatrix-method html
colAvgsPerRowSet-xgCMatrix-method html
colCollapse-xgCMatrix-method html
colCounts-xgCMatrix-method html
colCummaxs-dgCMatrix-method html
colCummins-dgCMatrix-method html
colCumprods-xgCMatrix-method html
colCumsums-xgCMatrix-method html
colDiffs-dgCMatrix-method html
colIQRDiffs-dgCMatrix-method html
colIQRs-xgCMatrix-method html
colLogSumExps-xgCMatrix-method html
colMadDiffs-dgCMatrix-method html
colMads-dgCMatrix-method html
colMaxs-dgCMatrix-method html
colMeans2-xgCMatrix-method html
colMedians-dgCMatrix-method html
colMins-dgCMatrix-method html
colOrderStats-dgCMatrix-method html
colProds-xgCMatrix-method html
colQuantiles-xgCMatrix-method html
colRanges-dgCMatrix-method html
colRanks-dgCMatrix-method html
colSdDiffs-dgCMatrix-method html
colSds-xgCMatrix-method html
colSums2-xgCMatrix-method html
colTabulates-xgCMatrix-method html
colVarDiffs-dgCMatrix-method html
colVars-xgCMatrix-method html
colWeightedMads-dgCMatrix-method html
colWeightedMeans-xgCMatrix-method html
colWeightedMedians-dgCMatrix-method html
colWeightedSds-xgCMatrix-method html
colWeightedVars-xgCMatrix-method html
xgCMatrix-class html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sparseMatrixStats' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:85:80: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)> [with auto:15 = SkipNAVectorSubsetView<14>; auto:16 = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:378:4: required from here
methods.cpp:351:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)> [with auto:15 = VectorSubsetView<14>; auto:16 = VectorSubsetView<13>]':
methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:378:4: required from here
methods.cpp:351:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:226:27: required from 'dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)> [with auto:5 = SkipNAVectorSubsetView<14>; auto:6 = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:227:4: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c row_methods.cpp -o row_methods.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/sparseMatrixStats.buildbin-libdir/sparseMatrixStats/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sparseMatrixStats' as sparseMatrixStats_1.2.1.zip
* DONE (sparseMatrixStats)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'sparseMatrixStats' successfully unpacked and MD5 sums checked
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sparseMatrixStats.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(sparseMatrixStats)
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
>
> test_check("sparseMatrixStats")
== Skipped tests ===============================================================
* different result than matrixStats version, because sparseMatrixStats uses `interpolate=FALSE`. (10)
* matrixStats doesn't convert values to logical if mat is logical?! (1)
* matrixStats has a bug if colCollapse is combined with subsetting (9)
* matrixStats has a bug if rowCollapse is combined with subsetting (1)
* matrixStats::xxxOrderStats() does not support missing values (10)
[ FAIL 0 | WARN 0 | SKIP 31 | PASS 1713 ]
>
> proc.time()
user system elapsed
6.71 0.26 6.98
|
sparseMatrixStats.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(sparseMatrixStats)
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
>
> test_check("sparseMatrixStats")
== Skipped tests ===============================================================
* different result than matrixStats version, because sparseMatrixStats uses `interpolate=FALSE`. (10)
* matrixStats doesn't convert values to logical if mat is logical?! (1)
* matrixStats has a bug if colCollapse is combined with subsetting (9)
* matrixStats has a bug if rowCollapse is combined with subsetting (1)
* matrixStats::xxxOrderStats() does not support missing values (10)
[ FAIL 0 | WARN 0 | SKIP 31 | PASS 1713 ]
>
> proc.time()
user system elapsed
7.31 0.20 7.53
|
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sparseMatrixStats.Rcheck/examples_i386/sparseMatrixStats-Ex.timings
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sparseMatrixStats.Rcheck/examples_x64/sparseMatrixStats-Ex.timings
|