Stuart Lee
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/plyranges |
| Branch: RELEASE_3_12 |
| Last Commit: 5856b8c |
| Last Changed Date: 2020-10-27 11:34:01 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:47 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the plyranges package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1361/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| plyranges 1.10.0 (landing page) Stuart Lee
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: plyranges |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/plyranges_1.10.0.tar.gz && rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL plyranges_1.10.0.zip && rm plyranges_1.10.0.tar.gz plyranges_1.10.0.zip |
| StartedAt: 2021-05-05 18:04:02 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:05:45 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 103.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/plyranges_1.10.0.tar.gz && rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL plyranges_1.10.0.zip && rm plyranges_1.10.0.tar.gz plyranges_1.10.0.zip
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install for i386
* installing *source* package 'plyranges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'plyranges'
finding HTML links ... done
add-nearest-distance html
as_ranges html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/as_ranges.Rd:34: file link 'AtomicList' in package 'IRanges' does not exist and so has been treated as a topic
compute_coverage html
element-setops html
filter-ranges html
group_by-ranges html
io-bam-read html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/io-bam-read.Rd:79: file link 'BamFile' in package 'Rsamtools' does not exist and so has been treated as a topic
io-bed-read html
io-bed-write html
io-bigwig-read html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/io-bigwig-read.Rd:34: file link 'BigWigFile-class' in package 'rtracklayer' does not exist and so has been treated as a topic
io-bigwig-write html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/io-bigwig-write.Rd:37: file link 'BigWigFile-class' in package 'rtracklayer' does not exist and so has been treated as a topic
io-gff-read html
io-gff-write html
io-wig-read html
io-wig-write html
mutate-ranges html
n html
n_distinct html
overlap-joins html
overscope_ranges html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/overscope_ranges.Rd:24: file link 'new_data_mask' in package 'rlang' does not exist and so has been treated as a topic
plyranges-package html
ranges-anchor html
ranges-arrange html
ranges-bind html
ranges-chop html
ranges-class html
ranges-construct html
ranges-count-overlaps html
ranges-deferred html
ranges-disjoin html
ranges-expand html
ranges-filter-overlaps html
ranges-flank html
ranges-follow html
ranges-info html
ranges-interweave html
ranges-names html
ranges-nearest html
ranges-overlaps-self html
ranges-overlaps html
ranges-pairs html
ranges-precede html
ranges-reduce html
ranges-select html
ranges-setops html
ranges-setters html
ranges-shift html
ranges-summarise html
ranges-tile html
slice-ranges html
stretch html
tidyverse-reexports html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:27: file link 'group_vars' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:27: file link 'groups' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:27: file link 'summarize' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:27: file link 'ungroup' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:29: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:31: file link '!!' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUTZf9b/R.INSTALLa28161c7237/plyranges/man/tidyverse-reexports.Rd:31: file link '!!!' in package 'rlang' does not exist and so has been treated as a topic
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'plyranges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plyranges' as plyranges_1.10.0.zip
* DONE (plyranges)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'plyranges' successfully unpacked and MD5 sums checked