Mike Jiang
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/flowViz |
| Branch: RELEASE_3_12 |
| Last Commit: f80fd24 |
| Last Changed Date: 2020-10-27 10:29:52 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:21 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the flowViz package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 639/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowViz 1.54.0 (landing page) Mike Jiang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: flowViz |
| Version: 1.54.0 |
| Command: rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.54.0.tar.gz |
| StartedAt: 2021-05-06 09:06:07 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:06:47 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 40.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: flowViz_1.54.0.zip |
| PackageFileSize: 969.4 KiB |
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### Running command:
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### rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.54.0.tar.gz
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install for i386
* installing *source* package 'flowViz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'densityplot' with signature 'x="formula",data="view"': no definition for class "view"
in method for 'densityplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'densityplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
in method for 'histogram' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'histogram' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
in method for 'glines' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'glines' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'glines' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'glpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'gpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'xyplot' with signature 'x="formula",data="view"': no definition for class "view"
in method for 'xyplot' with signature 'x="view",data="missing"': no definition for class "view"
in method for 'xyplot' with signature 'x="formula",data="gateView"': no definition for class "gateView"
in method for 'xyplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'xyplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
** help
*** installing help indices
converting help for package 'flowViz'
finding HTML links ... done
addName-methods html
contour-methods html
densityplot html
dot-process_flowFrame_overlay html
dot-process_overlay_flowSet html
ecdfplot html
flowPlot html
flowViz-package html
flowViz.par.get html
glines-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glines-methods.Rd:87: file link 'kmeansFilter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glines-methods.Rd:99: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glines-methods.Rd:106: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glines-methods.Rd:113: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glines-methods.Rd:120: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
glpoints-methods html
glpolygon-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glpolygon-methods.Rd:118: file link 'kmeansFilter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glpolygon-methods.Rd:130: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glpolygon-methods.Rd:137: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glpolygon-methods.Rd:144: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/glpolygon-methods.Rd:151: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
gpoints-methods html
gpolygon-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/gpolygon-methods.Rd:111: file link 'kmeansFilter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/gpolygon-methods.Rd:123: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/gpolygon-methods.Rd:130: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/gpolygon-methods.Rd:137: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/gpolygon-methods.Rd:144: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic
lattice-methods html
plot html
splom html
timeLinePlot html
xyplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/xyplot.Rd:115: file link 'filtersList-class' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0Ctztj/R.INSTALL1e503de65b71/flowViz/man/xyplot.Rd:185: file link 'sqrt' in package 'base' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowViz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowViz' as flowViz_1.54.0.zip
* DONE (flowViz)