##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings basilisk_1.2.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.2.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
basiliskRun: no visible binding for global variable ‘.basilisk.fun’
basiliskRun: no visible binding for global variable ‘.basilisk.args’
Undefined global functions or variables:
  .basilisk.args .basilisk.fun
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
basiliskStart    145.469 23.029 175.036
setupBasiliskEnv  31.732  9.748  41.889
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL basilisk
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (basilisk)

R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(basilisk)
> test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=0.25.1
    - python-dateutil=2.8.0
    - python=3.7.7
    - pytz=2019.3


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  numpy              conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
  pandas             conda-forge/osx-64::pandas-0.25.1-py37h86efe34_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.0-py_0
  pytz               conda-forge/noarch::pytz-2019.3-py_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=0.24.1
    - python-dateutil=2.7.1
    - python=3.7.7
    - pytz=2018.7


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  numpy              conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
  pandas             conda-forge/osx-64::pandas-0.24.1-py37h0a44026_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.7.1-py_0
  pytz               conda-forge/noarch::pytz-2018.7-py_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=2.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2019.11.28-py27h8c360ce_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
  python             conda-forge/osx-64::python-2.7.15-h8e446fc_1011_cpython
  python_abi         conda-forge/osx-64::python_abi-2.7-1_cp27m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-44.0.0-py27_0
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=2.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1
  certifi            conda-forge/osx-64::certifi-2019.11.2~ --> pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
  python             conda-forge::python-2.7.15-h8e446fc_1~ --> pkgs/main::python-2.7.18-hc817775_0

The following packages will be SUPERSEDED by a higher-priority channel:

  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python[version='2.7.*,2.7.*']


The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  certifi            pkgs/main/noarch::certifi-2020.6.20-p~ --> conda-forge/osx-64::certifi-2016.9.26-py27_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0
  python                pkgs/main::python-2.7.18-hc817775_0 --> conda-forge::python-2.7.15-h8e446fc_1011_cpython


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python-dateutil=2.7.1
    - python=3.7.7
    - pytz=2018.7


The following NEW packages will be INSTALLED:

  python-dateutil    conda-forge/noarch::python-dateutil-2.7.1-py_0
  pytz               conda-forge/noarch::pytz-2018.7-py_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting pandas==0.24.1
  Using cached pandas-0.24.1-cp37-cp37m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (15.9 MB)
Requirement already satisfied: python-dateutil>=2.5.0 in ./install-test-client/thingo/lib/python3.7/site-packages (from pandas==0.24.1) (2.7.1)
Requirement already satisfied: pytz>=2011k in ./install-test-client/thingo/lib/python3.7/site-packages (from pandas==0.24.1) (2018.7)
Collecting numpy>=1.12.0
  Using cached numpy-1.20.2-cp37-cp37m-macosx_10_9_x86_64.whl (16.0 MB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.7/site-packages (from python-dateutil>=2.5.0->pandas==0.24.1) (1.16.0)
Installing collected packages: numpy, pandas
Successfully installed numpy-1.20.2 pandas-0.24.1
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - whheeeeeeeeeeeeeeeeee=0.0.1

Current channels:

  - https://conda.anaconda.org/conda-forge/osx-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/osx-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.


PREFIX=/tmp/RtmpExzoks/filee8812540dd66/1.2.1/0
Unpacking payload ...

  0%|          | 0/33 [00:00<?, ?it/s]
Extracting : urllib3-1.25.8-py37_0.conda:   0%|          | 0/33 [00:01<?, ?it/s]
Extracting : urllib3-1.25.8-py37_0.conda:   3%|▎         | 1/33 [00:01<00:36,  1.14s/it]
Extracting : libcxx-10.0.0-1.conda:   3%|▎         | 1/33 [00:01<00:36,  1.14s/it]      
Extracting : libcxx-10.0.0-1.conda:   6%|▌         | 2/33 [00:01<00:31,  1.00s/it]
Extracting : six-1.14.0-py37_0.conda:   6%|▌         | 2/33 [00:01<00:31,  1.00s/it]
Extracting : setuptools-46.4.0-py37_0.conda:   9%|▉         | 3/33 [00:01<00:30,  1.00s/it]
Extracting : certifi-2020.4.5.1-py37_0.conda:  12%|█▏        | 4/33 [00:01<00:29,  1.00s/it]
Extracting : python-3.7.7-hf48f09d_4.conda:  15%|█▌        | 5/33 [00:03<00:28,  1.00s/it]  
Extracting : python-3.7.7-hf48f09d_4.conda:  18%|█▊        | 6/33 [00:03<00:22,  1.19it/s]
Extracting : pycosat-0.6.3-py37h1de35cc_0.conda:  18%|█▊        | 6/33 [00:03<00:22,  1.19it/s]
Extracting : requests-2.23.0-py37_0.conda:  21%|██        | 7/33 [00:03<00:21,  1.19it/s]      
Extracting : idna-2.9-py_1.conda:  24%|██▍       | 8/33 [00:03<00:21,  1.19it/s]         
Extracting : tqdm-4.46.0-py_0.conda:  27%|██▋       | 9/33 [00:03<00:20,  1.19it/s]
Extracting : libffi-3.3-h0a44026_1.conda:  30%|███       | 10/33 [00:03<00:19,  1.19it/s]
Extracting : chardet-3.0.4-py37_1003.conda:  33%|███▎      | 11/33 [00:03<00:18,  1.19it/s]
Extracting : conda-package-handling-1.6.1-py37h1de35cc_0.conda:  36%|███▋      | 12/33 [00:03<00:17,  1.19it/s]
Extracting : zlib-1.2.11-h1de35cc_3.conda:  39%|███▉      | 13/33 [00:03<00:16,  1.19it/s]                     
Extracting : ca-certificates-2020.1.1-0.conda:  42%|████▏     | 14/33 [00:03<00:16,  1.19it/s]
Extracting : python.app-2-py37_10.conda:  45%|████▌     | 15/33 [00:03<00:15,  1.19it/s]      
Extracting : cryptography-2.9.2-py37ha12b0ac_0.conda:  48%|████▊     | 16/33 [00:03<00:14,  1.19it/s]
Extracting : readline-8.0-h1de35cc_0.conda:  52%|█████▏    | 17/33 [00:03<00:13,  1.19it/s]          
Extracting : ruamel_yaml-0.15.87-py37h1de35cc_0.conda:  55%|█████▍    | 18/33 [00:03<00:12,  1.19it/s]
Extracting : libedit-3.1.20181209-hb402a30_0.conda:  58%|█████▊    | 19/33 [00:03<00:11,  1.19it/s]   
Extracting : openssl-1.1.1g-h1de35cc_0.conda:  61%|██████    | 20/33 [00:03<00:10,  1.19it/s]      
Extracting : cffi-1.14.0-py37hc512035_1.conda:  64%|██████▎   | 21/33 [00:03<00:10,  1.19it/s]
Extracting : pycparser-2.20-py_0.conda:  67%|██████▋   | 22/33 [00:03<00:09,  1.19it/s]       
Extracting : pyopenssl-19.1.0-py37_0.conda:  70%|██████▉   | 23/33 [00:03<00:08,  1.19it/s]
Extracting : yaml-0.1.7-hc338f04_2.conda:  73%|███████▎  | 24/33 [00:03<00:07,  1.19it/s]  
Extracting : sqlite-3.31.1-h5c1f38d_1.conda:  76%|███████▌  | 25/33 [00:03<00:06,  1.19it/s]
Extracting : pip-20.0.2-py37_3.conda:  79%|███████▉  | 26/33 [00:03<00:05,  1.19it/s]       
Extracting : ncurses-6.2-h0a44026_1.conda:  82%|████████▏ | 27/33 [00:03<00:05,  1.19it/s]
Extracting : xz-5.2.5-h1de35cc_0.conda:  85%|████████▍ | 28/33 [00:03<00:04,  1.19it/s]   
Extracting : pysocks-1.7.1-py37_0.conda:  88%|████████▊ | 29/33 [00:03<00:03,  1.19it/s]
Extracting : tk-8.6.8-ha441bb4_0.conda:  91%|█████████ | 30/33 [00:03<00:02,  1.19it/s] 
Extracting : wheel-0.34.2-py37_0.conda:  94%|█████████▍| 31/33 [00:03<00:01,  1.19it/s]
Extracting : conda-4.8.3-py37_0.tar.bz2:  97%|█████████▋| 32/33 [00:03<00:00,  1.19it/s]
                                                                                        
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpExzoks/filee8812540dd66/1.2.1/0

  added / updated specs:
    - ca-certificates==2020.1.1=0
    - certifi==2020.4.5.1=py37_0
    - cffi==1.14.0=py37hc512035_1
    - chardet==3.0.4=py37_1003
    - conda-package-handling==1.6.1=py37h1de35cc_0
    - conda==4.8.3=py37_0
    - cryptography==2.9.2=py37ha12b0ac_0
    - idna==2.9=py_1
    - libcxx==10.0.0=1
    - libedit==3.1.20181209=hb402a30_0
    - libffi==3.3=h0a44026_1
    - ncurses==6.2=h0a44026_1
    - openssl==1.1.1g=h1de35cc_0
    - pip==20.0.2=py37_3
    - pycosat==0.6.3=py37h1de35cc_0
    - pycparser==2.20=py_0
    - pyopenssl==19.1.0=py37_0
    - pysocks==1.7.1=py37_0
    - python.app==2=py37_10
    - python==3.7.7=hf48f09d_4
    - readline==8.0=h1de35cc_0
    - requests==2.23.0=py37_0
    - ruamel_yaml==0.15.87=py37h1de35cc_0
    - setuptools==46.4.0=py37_0
    - six==1.14.0=py37_0
    - sqlite==3.31.1=h5c1f38d_1
    - tk==8.6.8=ha441bb4_0
    - tqdm==4.46.0=py_0
    - urllib3==1.25.8=py37_0
    - wheel==0.34.2=py37_0
    - xz==5.2.5=h1de35cc_0
    - yaml==0.1.7=hc338f04_2
    - zlib==1.2.11=h1de35cc_3


The following NEW packages will be INSTALLED:

  ca-certificates    pkgs/main/osx-64::ca-certificates-2020.1.1-0
  certifi            pkgs/main/osx-64::certifi-2020.4.5.1-py37_0
  cffi               pkgs/main/osx-64::cffi-1.14.0-py37hc512035_1
  chardet            pkgs/main/osx-64::chardet-3.0.4-py37_1003
  conda              pkgs/main/osx-64::conda-4.8.3-py37_0
  conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.6.1-py37h1de35cc_0
  cryptography       pkgs/main/osx-64::cryptography-2.9.2-py37ha12b0ac_0
  idna               pkgs/main/noarch::idna-2.9-py_1
  libcxx             pkgs/main/osx-64::libcxx-10.0.0-1
  libedit            pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
  libffi             pkgs/main/osx-64::libffi-3.3-h0a44026_1
  ncurses            pkgs/main/osx-64::ncurses-6.2-h0a44026_1
  openssl            pkgs/main/osx-64::openssl-1.1.1g-h1de35cc_0
  pip                pkgs/main/osx-64::pip-20.0.2-py37_3
  pycosat            pkgs/main/osx-64::pycosat-0.6.3-py37h1de35cc_0
  pycparser          pkgs/main/noarch::pycparser-2.20-py_0
  pyopenssl          pkgs/main/osx-64::pyopenssl-19.1.0-py37_0
  pysocks            pkgs/main/osx-64::pysocks-1.7.1-py37_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python.app         pkgs/main/osx-64::python.app-2-py37_10
  readline           pkgs/main/osx-64::readline-8.0-h1de35cc_0
  requests           pkgs/main/osx-64::requests-2.23.0-py37_0
  ruamel_yaml        pkgs/main/osx-64::ruamel_yaml-0.15.87-py37h1de35cc_0
  setuptools         pkgs/main/osx-64::setuptools-46.4.0-py37_0
  six                pkgs/main/osx-64::six-1.14.0-py37_0
  sqlite             pkgs/main/osx-64::sqlite-3.31.1-h5c1f38d_1
  tk                 pkgs/main/osx-64::tk-8.6.8-ha441bb4_0
  tqdm               pkgs/main/noarch::tqdm-4.46.0-py_0
  urllib3            pkgs/main/osx-64::urllib3-1.25.8-py37_0
  wheel              pkgs/main/osx-64::wheel-0.34.2-py37_0
  xz                 pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
  yaml               pkgs/main/osx-64::yaml-0.1.7-hc338f04_2
  zlib               pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3


Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test

  added / updated specs:
    - python=3.7.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2020.12.5  |       h033912b_0         138 KB  conda-forge
    certifi-2020.12.5          |   py37hf985489_1         143 KB  conda-forge
    libcxx-11.1.0              |       habf9029_0         1.0 MB  conda-forge
    libffi-3.3                 |       h046ec9c_2          45 KB  conda-forge
    ncurses-6.2                |       h2e338ed_4         881 KB  conda-forge
    openssl-1.1.1k             |       h0d85af4_0         1.9 MB  conda-forge
    pip-21.1.1                 |     pyhd8ed1ab_0         1.1 MB  conda-forge
    python_abi-3.7             |          1_cp37m           4 KB  conda-forge
    readline-8.1               |       h05e3726_0         266 KB  conda-forge
    setuptools-49.6.0          |   py37hf985489_3         934 KB  conda-forge
    sqlite-3.35.5              |       h44b9ce1_0         1.7 MB  conda-forge
    tk-8.6.10                  |       h0419947_1         3.3 MB  conda-forge
    wheel-0.36.2               |     pyhd3deb0d_0          31 KB  conda-forge
    xz-5.2.5                   |       haf1e3a3_1         228 KB  conda-forge
    zlib-1.2.11                |    h7795811_1010         102 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        11.7 MB

The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010



Downloading and Extracting Packages

libcxx-11.1.0        | 1.0 MB    |            |   0% 
libcxx-11.1.0        | 1.0 MB    | ######2    |  62% 
libcxx-11.1.0        | 1.0 MB    | ########## | 100% 

ncurses-6.2          | 881 KB    |            |   0% 
ncurses-6.2          | 881 KB    | ########## | 100% 

ca-certificates-2020 | 138 KB    |            |   0% 
ca-certificates-2020 | 138 KB    | ########## | 100% 

wheel-0.36.2         | 31 KB     |            |   0% 
wheel-0.36.2         | 31 KB     | ########## | 100% 

xz-5.2.5             | 228 KB    |            |   0% 
xz-5.2.5             | 228 KB    | ########## | 100% 

tk-8.6.10            | 3.3 MB    |            |   0% 
tk-8.6.10            | 3.3 MB    | ########## | 100% 

pip-21.1.1           | 1.1 MB    |            |   0% 
pip-21.1.1           | 1.1 MB    | ########## | 100% 

libffi-3.3           | 45 KB     |            |   0% 
libffi-3.3           | 45 KB     | ########## | 100% 

sqlite-3.35.5        | 1.7 MB    |            |   0% 
sqlite-3.35.5        | 1.7 MB    | ########## | 100% 

python_abi-3.7       | 4 KB      |            |   0% 
python_abi-3.7       | 4 KB      | ########## | 100% 

readline-8.1         | 266 KB    |            |   0% 
readline-8.1         | 266 KB    | ########## | 100% 

zlib-1.2.11          | 102 KB    |            |   0% 
zlib-1.2.11          | 102 KB    | ########## | 100% 

openssl-1.1.1k       | 1.9 MB    |            |   0% 
openssl-1.1.1k       | 1.9 MB    | ########## | 100% 

setuptools-49.6.0    | 934 KB    |            |   0% 
setuptools-49.6.0    | 934 KB    | ########## | 100% 

certifi-2020.12.5    | 143 KB    |            |   0% 
certifi-2020.12.5    | 143 KB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test

  added / updated specs:
    - python=3.7.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2021.4.13  |       hecd8cb5_1         114 KB
    certifi-2020.12.5          |   py37hecd8cb5_0         140 KB
    openssl-1.1.1k             |       h9ed2024_0         2.2 MB
    ------------------------------------------------------------
                                           Total:         2.5 MB

The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0



Downloading and Extracting Packages

certifi-2020.12.5    | 140 KB    |            |   0% 
certifi-2020.12.5    | 140 KB    | ########## | 100% 

openssl-1.1.1k       | 2.2 MB    |            |   0% 
openssl-1.1.1k       | 2.2 MB    | ########## | 100% 

ca-certificates-2021 | 114 KB    |            |   0% 
ca-certificates-2021 | 114 KB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test

  added / updated specs:
    - pandas=0.25.1
    - python=3.7.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    libblas-3.9.0              |       9_openblas          11 KB  conda-forge
    libcblas-3.9.0             |       9_openblas          11 KB  conda-forge
    libgfortran-5.0.0          |9_3_0_h6c81a4c_22          19 KB  conda-forge
    libgfortran5-9.3.0         |      h6c81a4c_22         1.7 MB  conda-forge
    liblapack-3.9.0            |       9_openblas          11 KB  conda-forge
    libopenblas-0.3.15         |openmp_h5e1b9a4_0         8.7 MB  conda-forge
    llvm-openmp-11.1.0         |       hda6cdc1_1         268 KB  conda-forge
    numpy-1.20.2               |   py37h84c02c4_0         5.5 MB  conda-forge
    pandas-0.25.1              |   py37h86efe34_0        10.2 MB  conda-forge
    python-dateutil-2.8.1      |             py_0         220 KB  conda-forge
    pytz-2021.1                |     pyhd8ed1ab_0         239 KB  conda-forge
    six-1.16.0                 |     pyh6c4a22f_0          14 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        26.8 MB

The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  numpy              conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
  pandas             conda-forge/osx-64::pandas-0.25.1-py37h86efe34_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0



Downloading and Extracting Packages

pandas-0.25.1        | 10.2 MB   |            |   0% 
pandas-0.25.1        | 10.2 MB   |            |   0% 
pandas-0.25.1        | 10.2 MB   | ###6       |  37% 
pandas-0.25.1        | 10.2 MB   | #########  |  91% 
pandas-0.25.1        | 10.2 MB   | ########## | 100% 

pytz-2021.1          | 239 KB    |            |   0% 
pytz-2021.1          | 239 KB    | ########## | 100% 

libgfortran-5.0.0    | 19 KB     |            |   0% 
libgfortran-5.0.0    | 19 KB     | ########## | 100% 

six-1.16.0           | 14 KB     |            |   0% 
six-1.16.0           | 14 KB     | ########## | 100% 

python-dateutil-2.8. | 220 KB    |            |   0% 
python-dateutil-2.8. | 220 KB    | ########## | 100% 

libcblas-3.9.0       | 11 KB     |            |   0% 
libcblas-3.9.0       | 11 KB     | ########## | 100% 

libgfortran5-9.3.0   | 1.7 MB    |            |   0% 
libgfortran5-9.3.0   | 1.7 MB    | ########## | 100% 

libblas-3.9.0        | 11 KB     |            |   0% 
libblas-3.9.0        | 11 KB     | ########## | 100% 

llvm-openmp-11.1.0   | 268 KB    |            |   0% 
llvm-openmp-11.1.0   | 268 KB    | ########## | 100% 

libopenblas-0.3.15   | 8.7 MB    |            |   0% 
libopenblas-0.3.15   | 8.7 MB    | ####7      |  47% 
libopenblas-0.3.15   | 8.7 MB    | ########## | 100% 

numpy-1.20.2         | 5.5 MB    |            |   0% 
numpy-1.20.2         | 5.5 MB    | #######4   |  74% 
numpy-1.20.2         | 5.5 MB    | ########## | 100% 

liblapack-3.9.0      | 11 KB     |            |   0% 
liblapack-3.9.0      | 11 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpExzoks/filee8812540dd66/1.2.1/basilisk.utils-1.2.2/test

  added / updated specs:
    - pandas=0.25.1
    - python=3.7.7


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  numpy              conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
  pandas             conda-forge/osx-64::pandas-0.25.1-py37h86efe34_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


* installing *source* package ‘son.of.basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (son.of.basilisk)
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - pandas=0.25.1
    - python-dateutil=2.8.0
    - python=3.7.7
    - pytz=2019.3


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  numpy              conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
  pandas             conda-forge/osx-64::pandas-0.25.1-py37h86efe34_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.0-py_0
  pytz               conda-forge/noarch::pytz-2019.3-py_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - python=3.7.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py37hf985489_1
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             pkgs/main/osx-64::python-3.7.7-hf48f09d_4
  python_abi         conda-forge/osx-64::python_abi-3.7-1_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py37hf985489_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


#
# To activate this environment, use
#
#     $ conda activate /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
#
# To deactivate an active environment, use
#
#     $ conda deactivate

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - python=3.7.7


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2020.12.~ --> pkgs/main::ca-certificates-2021.4.13-hecd8cb5_1

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi            conda-forge::certifi-2020.12.5-py37hf~ --> pkgs/main::certifi-2020.12.5-py37hecd8cb5_0
  openssl            conda-forge::openssl-1.1.1k-h0d85af4_0 --> pkgs/main::openssl-1.1.1k-h9ed2024_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.12-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - pandas=0.24.1
    - python-dateutil=2.7.1
    - python=3.7.7
    - pytz=2018.7


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  numpy              conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
  pandas             conda-forge/osx-64::pandas-0.24.1-py37h0a44026_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.7.1-py_0
  pytz               conda-forge/noarch::pytz-2018.7-py_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0

The following packages will be UPDATED:

  certifi            pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
  openssl              pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.3
  latest version: 4.10.1

Please update conda by running

    $ conda update -n base -c defaults conda


[ FAIL 0 | WARN 9 | SKIP 0 | PASS 53 ]
> 
> proc.time()
   user  system elapsed 
502.720 136.434 673.790