Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:33 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the NormqPCR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1233/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NormqPCR 1.36.0 (landing page) James Perkins
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
Package: NormqPCR |
Version: 1.36.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NormqPCR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings NormqPCR_1.36.0.tar.gz |
StartedAt: 2021-05-06 05:07:27 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 05:10:43 -0400 (Thu, 06 May 2021) |
EllapsedTime: 196.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: NormqPCR.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NormqPCR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings NormqPCR_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'NormqPCR/DESCRIPTION' ... OK * this is package 'NormqPCR' version '1.36.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'NormqPCR' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6ZjOOZ/R.INSTALLb5865301ed0/NormqPCR/man/ComputeNRQs.Rd:14: file link 'qPCRBatch' in package 'ReadqPCR' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6ZjOOZ/R.INSTALLb5865301ed0/NormqPCR/man/CqValues.Rd:23: file link 'CyclesSet' in package 'ReadqPCR' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CqValues,CyclesSet: no visible binding for global variable 'l5' Undefined global functions or variables: l5 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CqValues 42.55 0.17 43.11 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CqValues 54.89 0.11 55 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck/00check.log' for details.
NormqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NormqPCR_1.36.0.tar.gz && rm -rf NormqPCR.buildbin-libdir && mkdir NormqPCR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormqPCR.buildbin-libdir NormqPCR_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NormqPCR_1.36.0.zip && rm NormqPCR_1.36.0.tar.gz NormqPCR_1.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 310k 100 310k 0 0 11.0M 0 --:--:-- --:--:-- --:--:-- 11.6M install for i386 * installing *source* package 'NormqPCR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NormqPCR' finding HTML links ... done Bladder html BladderRepro html Colon html ComputeNRQs html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6ZjOOZ/R.INSTALLb5865301ed0/NormqPCR/man/ComputeNRQs.Rd:14: file link 'qPCRBatch' in package 'ReadqPCR' does not exist and so has been treated as a topic CqValues html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6ZjOOZ/R.INSTALLb5865301ed0/NormqPCR/man/CqValues.Rd:23: file link 'CyclesSet' in package 'ReadqPCR' does not exist and so has been treated as a topic NormqPCR-package html combineTechReps html combineTechRepsSD html deltaCt html deltaDeltaCt html geNorm html geomMean html makeAllNAs html makeAllNewVal html replaceAboveCutOff html replaceNAs html selectHKs html stabMeasureM html stabMeasureRho html ** building package indices ** installing vignettes 'NormqPCR.Rnw' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'NormqPCR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'NormqPCR' as NormqPCR_1.36.0.zip * DONE (NormqPCR) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'NormqPCR' successfully unpacked and MD5 sums checked
NormqPCR.Rcheck/examples_i386/NormqPCR-Ex.timings
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NormqPCR.Rcheck/examples_x64/NormqPCR-Ex.timings
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