Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:28:25 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the NormqPCR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1233/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NormqPCR 1.36.0 (landing page) James Perkins
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
Package: NormqPCR |
Version: 1.36.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings NormqPCR_1.36.0.tar.gz |
StartedAt: 2021-05-06 04:04:04 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 04:06:04 -0400 (Thu, 06 May 2021) |
EllapsedTime: 119.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NormqPCR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings NormqPCR_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NormqPCR/DESCRIPTION’ ... OK * this is package ‘NormqPCR’ version ‘1.36.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NormqPCR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CqValues,CyclesSet: no visible binding for global variable ‘l5’ Undefined global functions or variables: l5 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CqValues 46.3 0.08 46.502 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck/00check.log’ for details.
NormqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL NormqPCR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘NormqPCR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘NormqPCR.Rnw’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NormqPCR)
NormqPCR.Rcheck/NormqPCR-Ex.timings
name | user | system | elapsed | |
Bladder | 0.016 | 0.000 | 0.015 | |
BladderRepro | 0.000 | 0.004 | 0.005 | |
Colon | 0.008 | 0.000 | 0.007 | |
ComputeNRQs | 0.192 | 0.008 | 0.260 | |
CqValues | 46.300 | 0.080 | 46.502 | |
NormqPCR-package | 0.000 | 0.000 | 0.001 | |
combineTechReps | 0.064 | 0.004 | 0.084 | |
combineTechRepsSD | 0.12 | 0.00 | 0.12 | |
deltaCt | 0.136 | 0.000 | 0.152 | |
deltaDeltaCt | 0.176 | 0.000 | 0.175 | |
geNorm | 0.004 | 0.004 | 0.008 | |
geomMean | 0.004 | 0.000 | 0.000 | |
makeAllNAs | 0.080 | 0.004 | 0.086 | |
makeAllNewVal | 0.084 | 0.000 | 0.082 | |
replaceAboveCutOff | 0.116 | 0.000 | 0.118 | |
replaceNAs | 0.152 | 0.000 | 0.152 | |
selectHKs | 0.048 | 0.000 | 0.045 | |
stabMeasureM | 0.200 | 0.004 | 0.207 | |
stabMeasureRho | 0.132 | 0.000 | 0.130 | |