InterMine Team
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/InterMineR |
| Branch: RELEASE_3_12 |
| Last Commit: ecd9a83 |
| Last Changed Date: 2021-04-28 05:11:58 -0400 (Wed, 28 Apr 2021) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:51 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the InterMineR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 905/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| InterMineR 1.12.3 (landing page) InterMine Team
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: InterMineR |
| Version: 1.12.3 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/InterMineR_1.12.3.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.12.3.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.12.3.zip && rm InterMineR_1.12.3.tar.gz InterMineR_1.12.3.zip |
| StartedAt: 2021-05-05 17:47:58 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:48:42 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 43.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/InterMineR_1.12.3.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.12.3.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.12.3.zip && rm InterMineR_1.12.3.tar.gz InterMineR_1.12.3.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 4505k 100 4505k 0 0 59.8M 0 --:--:-- --:--:-- --:--:-- 61.1M
install for i386
* installing *source* package 'InterMineR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'intersect' in package 'InterMineR'
Creating a new generic function for 'union' in package 'InterMineR'
** help
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item'
*** installing help indices
converting help for package 'InterMineR'
finding HTML links ... done
InterMineR-class html
InterMineR-methods html
InterMineR-package html
ListManager-class html
ListManager-methods html
PL_DiabetesGenes html
PL_FlyTF_site_specific_TFs html
convertToGRanges html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:5: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:8: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:35: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:38: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:41: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:56: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:59: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGRanges.Rd:66: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
convertToGeneAnswers html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToGeneAnswers.Rd:8: file link 'GeneAnswers' in package 'GeneAnswers' does not exist and so has been treated as a topic
convertToRangedSummarizedExperiment html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:5: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:8: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:43: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:46: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:52: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:54: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:58: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:61: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9Kd5X/R.INSTALL1f9014973d97/InterMineR/man/convertToRangedSummarizedExperiment.Rd:69: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
doEnrichment html
getDatasets html
getGeneIds html
getModel html
getRelease html
getTemplateQuery html
getTemplates html
getVersion html
getWidgets html
initInterMine html
listDatasets html
listMines html
list_manager html
newQuery html
runQuery html
setConstraints html
setQuery html
simplifyResult html
summary html
webservice-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'InterMineR' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
* MD5 sums
packaged installation of 'InterMineR' as InterMineR_1.12.3.zip
* DONE (InterMineR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'InterMineR' successfully unpacked and MD5 sums checked