Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:42 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the GSVA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 802/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GSVA 1.38.2 (landing page) Justin Guinney
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GSVA |
Version: 1.38.2 |
Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSVA.buildbin-libdir GSVA_1.38.2.tar.gz |
StartedAt: 2021-05-06 09:15:19 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:16:00 -0400 (Thu, 06 May 2021) |
EllapsedTime: 41.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GSVA_1.38.2.zip |
PackageFileSize: 1.345 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSVA.buildbin-libdir GSVA_1.38.2.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GSVA' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:24:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register_cmethods.c -o register_cmethods.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/GSVA.buildbin-libdir/00LOCK-GSVA/00new/GSVA/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GSVA' finding HTML links ... done computeGeneSetsOverlap html filterGeneSets html gsva html finding level-2 HTML links ... done igsva html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GSVA' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:24:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register_cmethods.c -o register_cmethods.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/GSVA.buildbin-libdir/GSVA/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GSVA' as GSVA_1.38.2.zip * DONE (GSVA)