Multiple platform build/check report for BioC 3.12 - CHECK report for CellMixS on tokay1

Package: CellMixS

Version: 1.6.1

Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellMixS.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings CellMixS_1.6.1.tar.gz

StartedAt: 2021-05-06 01:15:07 -0400 (Thu, 06 May 2021)

EndedAt: 2021-05-06 01:22:09 -0400 (Thu, 06 May 2021)

EllapsedTime: 421.9 seconds

RetCode: 0

Status: OK

CheckDir: CellMixS.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellMixS.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings CellMixS_1.6.1.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/CellMixS.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CellMixS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CellMixS' version '1.6.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CellMixS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
    user system elapsed
cms  3.4   0.06   10.27
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CellMixS_1.6.1.tar.gz && rm -rf CellMixS.buildbin-libdir && mkdir CellMixS.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMixS.buildbin-libdir CellMixS_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CellMixS_1.6.1.zip && rm CellMixS_1.6.1.tar.gz CellMixS_1.6.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1449k  100 1449k    0     0  38.3M      0 --:--:-- --:--:-- --:--:-- 39.3M

install for i386

* installing *source* package 'CellMixS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellMixS'
    finding HTML links ... done
    CellMixS-package                        html  
    cms                                     html  
    finding level-2 HTML links ... done

    dot-cmsCell                             html  
    dot-defineSubspace                      html  
    dot-filterKnn                           html  
    dot-filterLocMin                        html  
    dot-ldfKnn                              html  
    dot-smoothCms                           html  
    entropy                                 html  
    evalIntegration                         html  
    isi                                     html  
    ldfDiff                                 html  
    ldfSce                                  html  
    locStructure                            html  
    mixMetric                               html  
    visCluster                              html  
    visGroup                                html  
    visHist                                 html  
    visIntegration                          html  
    visMetric                               html  
    visOverview                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CellMixS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellMixS' as CellMixS_1.6.1.zip
* DONE (CellMixS)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'CellMixS' successfully unpacked and MD5 sums checked


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(CellMixS)
Loading required package: kSamples
Loading required package: SuppDists
> 
> test_check("CellMixS")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 81 ]
> 
> proc.time()
   user  system elapsed 
  41.90    0.96   42.86


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(CellMixS)
Loading required package: kSamples
Loading required package: SuppDists
> 
> test_check("CellMixS")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 81 ]
> 
> proc.time()
   user  system elapsed 
  53.59    0.73   54.32

name	user	system	elapsed
cms	3.40	0.06	10.27
entropy	0.60	0.08	0.67
evalIntegration	4.26	0.02	4.28
isi	0.60	0.01	0.61
ldfDiff	1.08	0.03	1.11
ldfSce	0.64	0.08	0.73
locStructure	1.19	0.16	1.35
mixMetric	0.45	0.01	0.47
visCluster	2.59	0.03	2.62
visGroup	0.67	0.04	0.70
visHist	3.13	0.20	3.33
visIntegration	3.14	0.03	3.17
visMetric	1.98	0.00	1.98
visOverview	3.64	0.00	3.64

name	user	system	elapsed
cms	3.95	0.00	3.95
entropy	0.41	0.03	0.44
evalIntegration	3.95	0.01	3.97
isi	0.38	0.03	0.40
ldfDiff	0.72	0.02	0.73
ldfSce	0.49	0.01	0.50
locStructure	0.92	0.02	0.94
mixMetric	0.33	0.03	0.36
visCluster	2.36	0.05	2.41
visGroup	0.40	0.01	0.42
visHist	2.33	0.07	2.39
visIntegration	2.56	0.03	2.59
visMetric	1.93	0.01	1.94
visOverview	3.38	0.03	3.41

CHECK report for CellMixS on tokay1

Summary

Command output

Installation output

Tests output

Example timings