This page was generated on 2020-10-16 17:00:15 -0400 (Fri, 16 Oct 2020).
EGSEA123 1.12.0 Matthew Ritchie
Snapshot Date: 2020-10-16 08:00:02 -0400 (Fri, 16 Oct 2020) |
URL: https://git.bioconductor.org/packages/EGSEA123 |
Branch: RELEASE_3_11 |
Last Commit: 83fced9 |
Last Changed Date: 2020-04-27 14:03:53 -0400 (Mon, 27 Apr 2020) |
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | [ ERROR ] | |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EGSEA123
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* checking for file ‘EGSEA123/DESCRIPTION’ ... OK
* preparing ‘EGSEA123’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EGSEAWorkflow.Rmd’ using rmarkdown
trying URL 'http://bioinf.wehi.edu.au/EGSEA/mam.rnaseq.rdata'
Content type 'text/plain; charset=UTF-8' length 1786017 bytes (1.7 MB)
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downloaded 1.7 MB
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:limma':
plotMA
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: gage
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: topGO
Loading required package: graph
Loading required package: GO.db
Loading required package: SparseM
Attaching package: 'SparseM'
The following object is masked from 'package:base':
backsolve
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
Attaching package: 'topGO'
The following object is masked from 'package:IRanges':
members
The following object is masked from 'package:gage':
geneData
Loading required package: pathview
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Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.
The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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trying URL 'http://bioinf.wehi.edu.au/EGSEA/arraydata.zip'
Content type 'application/zip' length 37406670 bytes (35.7 MB)
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downloaded 8.8 MB
Quitting from lines 477-488 (EGSEAWorkflow.Rmd)
Error: processing vignette 'EGSEAWorkflow.Rmd' failed with diagnostics:
download from 'http://bioinf.wehi.edu.au/EGSEA/arraydata.zip' failed
--- failed re-building ‘EGSEAWorkflow.Rmd’
SUMMARY: processing the following file failed:
‘EGSEAWorkflow.Rmd’
Error: Vignette re-building failed.
Execution halted