Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:45:48 -0400 (Thu, 15 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE hgu2beta7 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 171/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
hgu2beta7 1.28.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ WARNINGS ] |
Package: hgu2beta7 |
Version: 1.28.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:hgu2beta7.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings hgu2beta7_1.28.0.tar.gz |
StartedAt: 2020-10-15 13:30:43 -0400 (Thu, 15 Oct 2020) |
EndedAt: 2020-10-15 13:31:05 -0400 (Thu, 15 Oct 2020) |
EllapsedTime: 22.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: hgu2beta7.Rcheck |
Warnings: 3 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:hgu2beta7.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings hgu2beta7_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/hgu2beta7.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘hgu2beta7/DESCRIPTION’ ... OK * this is package ‘hgu2beta7’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hgu2beta7’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.0Mb sub-directories of 1Mb or more: data 6.9Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Subdirectory ‘data’ contains no data sets. * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE hgu2beta7: no visible binding for global variable ‘hgu2beta7QC’ Undefined global functions or variables: hgu2beta7QC * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... WARNING 'library' or 'require' call not declared from: ‘annotate’ * checking contents of ‘data’ directory ... WARNING Files not of a type allowed in a ‘data’ directory: ‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’ Please use e.g. ‘inst/extdata’ for non-R data files * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 3 WARNINGs, 3 NOTEs See ‘/home/biocbuild/bbs-3.11-data-experiment/meat/hgu2beta7.Rcheck/00check.log’ for details.
hgu2beta7.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL hgu2beta7 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘hgu2beta7’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hgu2beta7)
hgu2beta7.Rcheck/hgu2beta7-Ex.timings
name | user | system | elapsed | |
hgu2beta7ACCNUM | 0.093 | 0.008 | 0.102 | |
hgu2beta7CHR | 0.044 | 0.000 | 0.044 | |
hgu2beta7CHRLENGTHS | 0 | 0 | 0 | |
hgu2beta7CHRLOC | 0.14 | 0.00 | 0.14 | |
hgu2beta7ENZYME | 0.016 | 0.004 | 0.020 | |
hgu2beta7ENZYME2PROBE | 0.002 | 0.000 | 0.002 | |
hgu2beta7GENENAME | 0.029 | 0.004 | 0.033 | |
hgu2beta7GO | 0.173 | 0.011 | 0.183 | |
hgu2beta7GO2ALLPROBES | 0.190 | 0.012 | 0.202 | |
hgu2beta7GO2PROBE | 0.036 | 0.000 | 0.037 | |
hgu2beta7GRIF | 0.02 | 0.00 | 0.02 | |
hgu2beta7LOCUSID | 0.021 | 0.001 | 0.022 | |
hgu2beta7MAP | 0.084 | 0.002 | 0.086 | |
hgu2beta7OMIM | 0.029 | 0.000 | 0.029 | |
hgu2beta7ORGANISM | 0 | 0 | 0 | |
hgu2beta7PATH | 0.156 | 0.000 | 0.157 | |
hgu2beta7PATH2PROBE | 0.002 | 0.000 | 0.002 | |
hgu2beta7PMID | 0.080 | 0.000 | 0.079 | |
hgu2beta7PMID2PROBE | 0.244 | 0.000 | 0.243 | |
hgu2beta7REFSEQ | 0.126 | 0.008 | 0.133 | |
hgu2beta7SUMFUNC | 0.052 | 0.000 | 0.052 | |
hgu2beta7SYMBOL | 0.03 | 0.00 | 0.03 | |
hgu2beta7UNIGENE | 0.033 | 0.000 | 0.034 | |