| Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:45:44 -0400 (Thu, 15 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE brgedata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 41/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| brgedata 1.10.0 Carlos Ruiz-Arenas
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ WARNINGS ] |
| Package: brgedata |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings brgedata_1.10.0.tar.gz |
| StartedAt: 2020-10-15 13:00:14 -0400 (Thu, 15 Oct 2020) |
| EndedAt: 2020-10-15 13:05:19 -0400 (Thu, 15 Oct 2020) |
| EllapsedTime: 305.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: brgedata.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings brgedata_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/brgedata.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘brgedata/DESCRIPTION’ ... OK
* this is package ‘brgedata’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘brgedata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 638.3Mb
sub-directories of 1Mb or more:
data 184.2Mb
extdata 454.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
Warning: found non-ASCII strings
'Average Brominated THM uptake (<b5>g/day)' in object 'brge_expo'
'Average Chloroform uptake (<b5>g/day)' in object 'brge_expo'
'Average total THM uptake (<b5>g/day)' in object 'brge_expo'
'Benzene levels (<b5>g/m3)' in object 'brge_expo'
'BPA (<b5>g/g creatine)' in object 'brge_expo'
'Mercury (<b5>g/l)' in object 'brge_expo'
'NO2 levels (<b5>g/m3)' in object 'brge_expo'
'PFBS (<b5>g/l)' in object 'brge_expo'
'PFHxS (<b5>g/l)' in object 'brge_expo'
'PFOA (<b5>g/l)' in object 'brge_expo'
'<b5>g/l' in object 'brge_expo'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
brge_methy 12.071 0.528 18.029
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.11-data-experiment/meat/brgedata.Rcheck/00check.log’
for details.
brgedata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL brgedata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘brgedata’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brgedata)
brgedata.Rcheck/brgedata-Ex.timings
| name | user | system | elapsed | |
| brge_gexp | 1.545 | 0.096 | 1.641 | |
| brge_methy | 12.071 | 0.528 | 18.029 | |
| brge_prot | 0.002 | 0.000 | 0.003 | |