| Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:46:01 -0400 (Thu, 15 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE signatureSearchData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 338/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| signatureSearchData 1.2.2 Yuzhu Duan
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] |
| Package: signatureSearchData |
| Version: 1.2.2 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings signatureSearchData_1.2.2.tar.gz |
| StartedAt: 2020-10-15 14:10:20 -0400 (Thu, 15 Oct 2020) |
| EndedAt: 2020-10-15 14:13:53 -0400 (Thu, 15 Oct 2020) |
| EllapsedTime: 213.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: signatureSearchData.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings signatureSearchData_1.2.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/signatureSearchData.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘signatureSearchData/DESCRIPTION’ ... OK * this is package ‘signatureSearchData’ version ‘1.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘signatureSearchData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
signatureSearchData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL signatureSearchData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘signatureSearchData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (signatureSearchData)
signatureSearchData.Rcheck/signatureSearchData-Ex.timings
| name | user | system | elapsed | |
| ES_NULL | 4.307 | 0.212 | 4.982 | |
| GO_DATA | 1.208 | 0.016 | 1.295 | |
| GO_DATA_drug | 1.332 | 0.016 | 1.416 | |
| cmap | 0.068 | 0.000 | 0.068 | |
| cmap_expr | 0.064 | 0.000 | 0.064 | |
| cmap_rank | 0.062 | 0.000 | 0.062 | |
| combineNormRes | 0 | 0 | 0 | |
| combineResults | 0 | 0 | 0 | |
| dtlink_db_clue_sti | 1.279 | 0.004 | 1.363 | |
| getCmapCEL | 0.000 | 0.000 | 0.001 | |
| goAnno | 0.953 | 0.000 | 1.011 | |
| goAnno_drug | 0.925 | 0.016 | 1.021 | |
| inst_filter | 0.007 | 0.000 | 0.007 | |
| lincs | 0.071 | 0.004 | 0.075 | |
| lincs_expr | 0.077 | 0.000 | 0.077 | |
| meanExpr | 0.047 | 0.000 | 0.065 | |
| meanExpr2h5 | 0.426 | 0.059 | 0.511 | |
| normalizeCel | 0.000 | 0.000 | 0.001 | |
| probe2gene | 0.016 | 0.000 | 0.016 | |
| runLimma | 1.954 | 0.000 | 1.967 | |
| sampleList | 2.182 | 0.000 | 2.182 | |
| sig_filter | 0.006 | 0.000 | 0.006 | |
| signatureSearchData | 1.511 | 0.016 | 1.915 | |
| taurefList | 1.029 | 0.004 | 1.095 | |