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INSTALL report for SingleCellExperiment on tokay2

This page was generated on 2020-04-15 03:20:10 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE SingleCellExperiment PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 78/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SingleCellExperiment 1.9.3
Davide Risso
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/SingleCellExperiment
Branch: master
Last Commit: fb475ac
Last Changed Date: 2020-03-31 01:52:05 -0400 (Tue, 31 Mar 2020)
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 

Summary

Package: SingleCellExperiment
Version: 1.9.3
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/SingleCellExperiment_1.9.3.tar.gz && rm -rf SingleCellExperiment.buildbin-libdir && mkdir SingleCellExperiment.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SingleCellExperiment.buildbin-libdir SingleCellExperiment_1.9.3.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL SingleCellExperiment_1.9.3.zip && rm SingleCellExperiment_1.9.3.tar.gz SingleCellExperiment_1.9.3.zip
StartedAt: 2020-04-14 18:09:48 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:10:22 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 33.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/SingleCellExperiment_1.9.3.tar.gz && rm -rf SingleCellExperiment.buildbin-libdir && mkdir SingleCellExperiment.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SingleCellExperiment.buildbin-libdir SingleCellExperiment_1.9.3.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL SingleCellExperiment_1.9.3.zip && rm SingleCellExperiment_1.9.3.tar.gz SingleCellExperiment_1.9.3.zip
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install for i386

* installing *source* package 'SingleCellExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SingleCellExperiment'
    finding HTML links ... done
    LEM-combine                             html  
    LEM-getset                              html  
    LEM-misc                                html  
    LEM-subset                              html  
    LinearEmbeddingMatrix                   html  
    SingleCellExperiment                    html  
    finding level-2 HTML links ... done

    altExps                                 html  
    assays                                  html  
    colLabels                               html  
    combine                                 html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpI3Ytnn/R.INSTALL994a54bb9/SingleCellExperiment/man/combine.Rd:27: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
    defunct                                 html  
    internals                               html  
    miscellaneous                           html  
    reducedDims                             html  
    sizeFactors                             html  
    splitAltExps                            html  
    swapAltExp                              html  
    updateObject                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SingleCellExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SingleCellExperiment' as SingleCellExperiment_1.9.3.zip
* DONE (SingleCellExperiment)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'SingleCellExperiment' successfully unpacked and MD5 sums checked