This page was generated on 2020-04-15 03:20:10 -0400 (Wed, 15 Apr 2020).
SingleCellExperiment 1.9.3 Davide Risso
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020) |
URL: https://git.bioconductor.org/packages/SingleCellExperiment |
Branch: master |
Last Commit: fb475ac |
Last Changed Date: 2020-03-31 01:52:05 -0400 (Tue, 31 Mar 2020) |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped |
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### Running command:
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### chmod a+r SingleCellExperiment -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SingleCellExperiment
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* checking for file 'SingleCellExperiment/DESCRIPTION' ... OK
* preparing 'SingleCellExperiment':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'devel.Rmd' using rmarkdown
Loading required package: SummarizedExperiment
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: DelayedArray
Loading required package: matrixStats
Attaching package: 'matrixStats'
The following objects are masked from 'package:Biobase':
anyMissing, rowMedians
Attaching package: 'DelayedArray'
The following objects are masked from 'package:matrixStats':
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following objects are masked from 'package:base':
aperm, apply, rowsum
--- finished re-building 'devel.Rmd'
--- re-building 'intro.Rmd' using rmarkdown
using temporary cache C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpwTqk3k/BiocFileCache
snapshotDate(): 2020-04-03
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
downloading 1 resources
retrieving 1 resource
Warning: download failed
web resource path: 'https://experimenthub.bioconductor.org/fetch/2573'
local file path: 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpwTqk3k/BiocFileCache/cdc5f673749_2573'
reason: Internal Server Error (HTTP 500).
Warning: bfcadd() failed; resource removed
rid: BFC3
fpath: 'https://experimenthub.bioconductor.org/fetch/2573'
reason: download failed
Warning: download failed
hub path: 'https://experimenthub.bioconductor.org/fetch/2573'
cache resource: 'EH2557 : 2573'
reason: bfcadd() failed; see warnings()
Quitting from lines 86-89 (intro.Rmd)
Error: processing vignette 'intro.Rmd' failed with diagnostics:
failed to load resource
name: EH2557
title: Allen brain Tophat counts
reason: 1 resources failed to download
--- failed re-building 'intro.Rmd'
SUMMARY: processing the following file failed:
'intro.Rmd'
Error: Vignette re-building failed.
Execution halted