Package: sampleClassifier

Version: 1.11.0

Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sampleClassifier.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings sampleClassifier_1.11.0.tar.gz

StartedAt: 2020-03-12 08:35:07 -0400 (Thu, 12 Mar 2020)

EndedAt: 2020-03-12 08:43:57 -0400 (Thu, 12 Mar 2020)

EllapsedTime: 530.1 seconds

RetCode: 0

Status:  OK

CheckDir: sampleClassifier.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sampleClassifier.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings sampleClassifier_1.11.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/sampleClassifier.Rcheck'
* using R Under development (unstable) (2020-01-27 r77730)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sampleClassifier/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sampleClassifier' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sampleClassifier' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     85.84   0.29   90.03
classifyProfile            33.55   1.24   35.12
get.heatmap                20.75   0.37   21.12
classifyProfile.svm        17.67   0.39   18.07
classifyProfile.rnaseq.svm 13.03   0.13   13.15
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     88.66   0.69   89.35
classifyProfile            38.92   0.61   39.53
get.heatmap                30.33   0.33   30.65
classifyProfile.svm        25.41   0.33   25.74
classifyProfile.rnaseq.svm 16.00   0.23   16.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/sampleClassifier_1.11.0.tar.gz && rm -rf sampleClassifier.buildbin-libdir && mkdir sampleClassifier.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sampleClassifier.buildbin-libdir sampleClassifier_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL sampleClassifier_1.11.0.zip && rm sampleClassifier_1.11.0.tar.gz sampleClassifier_1.11.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  219k  100  219k    0     0  3389k      0 --:--:-- --:--:-- --:--:-- 3791k

install for i386

* installing *source* package 'sampleClassifier' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sampleClassifier'
    finding HTML links ... done
    classifyProfile                         html  
    classifyProfile.rnaseq                  html  
    classifyProfile.rnaseq.svm              html  
    classifyProfile.svm                     html  
    get.heatmap                             html  
    sampleClassifier-internal               html  
    sampleClassifier-package                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sampleClassifier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sampleClassifier' as sampleClassifier_1.11.0.zip
* DONE (sampleClassifier)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'sampleClassifier' successfully unpacked and MD5 sums checked