Package: sampleClassifier

Version: 1.11.0

Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:sampleClassifier.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings sampleClassifier_1.11.0.tar.gz

StartedAt: 2020-03-12 05:21:46 -0400 (Thu, 12 Mar 2020)

EndedAt: 2020-03-12 05:27:24 -0400 (Thu, 12 Mar 2020)

EllapsedTime: 337.7 seconds

RetCode: 0

Status:  OK

CheckDir: sampleClassifier.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:sampleClassifier.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings sampleClassifier_1.11.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/sampleClassifier.Rcheck’
* using R Under development (unstable) (2020-01-28 r77731)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sampleClassifier/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sampleClassifier’ version ‘1.11.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sampleClassifier’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
classifyProfile.rnaseq     92.634  0.130  94.052
classifyProfile            37.625  0.534  38.509
get.heatmap                29.944  0.060  30.496
classifyProfile.svm        26.588  0.104  27.180
classifyProfile.rnaseq.svm 17.479  0.040  17.827
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL sampleClassifier
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘sampleClassifier’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sampleClassifier)

name	user	system	elapsed
classifyProfile	37.625	0.534	38.509
classifyProfile.rnaseq	92.634	0.130	94.052
classifyProfile.rnaseq.svm	17.479	0.040	17.827
classifyProfile.svm	26.588	0.104	27.180
get.heatmap	29.944	0.060	30.496
sampleClassifier-package	0	0	0