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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:methylInheritance.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings methylInheritance_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/methylInheritance.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'methylInheritance/DESCRIPTION' ... OK
* this is package 'methylInheritance' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'methylInheritance' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
runPermutation                      130.97   0.28  130.95
runObservation                       65.34   0.47   66.63
samplesForTransgenerationalAnalysis  51.55   0.60   52.81
runOnePermutationOnAllGenerations    19.01   0.45   19.42
demoForTransgenerationalAnalysis      9.47   0.52    9.98
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
runPermutation                      176.17   0.17  176.08
runObservation                       65.05   0.09   65.12
samplesForTransgenerationalAnalysis  58.52   0.17   58.92
runOnePermutationOnAllGenerations    17.87   0.19   18.05
demoForTransgenerationalAnalysis      8.08   0.13    8.21
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methylInheritance_1.12.0.tar.gz && rm -rf methylInheritance.buildbin-libdir && mkdir methylInheritance.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylInheritance.buildbin-libdir methylInheritance_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methylInheritance_1.12.0.zip && rm methylInheritance_1.12.0.tar.gz methylInheritance_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 1449k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1449k  100 1449k    0     0  3714k      0 --:--:-- --:--:-- --:--:-- 3775k

install for i386

* installing *source* package 'methylInheritance' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methylInheritance'
    finding HTML links ... done
    calculateSignificantLevel               html  
    createDataStructure                     html  
    createOutputDir                         html  
    demoForTransgenerationalAnalysis        html  
    extractInfo                             html  
    formatInputMethylData                   html  
    getGRangesFromMethylDiff                html  
    interGeneration                         html  
    isInterGenerationResults                html  
    loadAllRDSResults                       html  
    loadConvergenceData                     html  
    mergePermutationAndObservation          html  
    methylInheritance-package               html  
    methylInheritanceAllResults             html  
    methylInheritanceResults                html  
    plotConvergenceGraph                    html  
    plotGraph                               html  
    readInterGenerationResults              html  
    runObservation                          html  
    runOnePermutationOnAllGenerations       html  
    runPermutation                          html  
    samplesForTransgenerationalAnalysis     html  
    saveInterGenerationResults              html  
    validateExtractInfo                     html  
    validateLoadConvergenceData             html  
    validateMergePermutationAndObservation
                                            html  
    validateRunObservation                  html  
    validateRunPermutation                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methylInheritance' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylInheritance' as methylInheritance_1.12.0.zip
* DONE (methylInheritance)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methylInheritance' successfully unpacked and MD5 sums checked