Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

BUILD BIN report for TCGAutils on tokay2

This page was generated on 2020-10-16 11:59:02 -0400 (Fri, 16 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE TCGAutils PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1786/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAutils 1.8.1
Marcel Ramos
Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/TCGAutils
Branch: RELEASE_3_11
Last Commit: c6301f3
Last Changed Date: 2020-09-14 14:09:15 -0400 (Mon, 14 Sep 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TCGAutils
Version: 1.8.1
Command: rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.8.1.tar.gz
StartedAt: 2020-10-16 11:28:15 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 11:29:52 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 97.2 seconds
RetCode: 0
Status:  OK  
PackageFile: TCGAutils_1.8.1.zip
PackageFileSize: 467.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.8.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'TCGAutils' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TCGAutils'
    finding HTML links ... done
    ID-translation                          html  
    TCGAbarcode                             html  
    TCGAbiospec                             html  
    TCGAprimaryTumors                       html  
    finding level-2 HTML links ... done

    TCGAsampleSelect                        html  
    TCGAutils-package                       html  
    builds                                  html  
    clinicalNames                           html  
    curatedTCGAData-helpers                 html  
    diseaseCodes                            html  
    findGRangesCols                         html  
    generateMap                             html  
    getFileName                             html  
    hidden-helpers                          html  
    imputeAssay                             html  
    makeGRangesListFromCopyNumber           html  
    makeGRangesListFromExonFiles            html  
    makeSummarizedExperimentFromGISTIC      html  
    mergeColData                            html  
    oncoPrintTCGA                           html  
    sampleTypes                             html  
    simplifyTCGA                            html  
    trimColData                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TCGAutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAutils' as TCGAutils_1.8.1.zip
* DONE (TCGAutils)