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INSTALL report for TAPseq on tokay2

This page was generated on 2020-10-17 11:57:55 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE TAPseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1777/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TAPseq 1.0.0
Andreas Gschwind
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/TAPseq
Branch: RELEASE_3_11
Last Commit: 8a16f63
Last Changed Date: 2020-04-27 15:34:33 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: TAPseq
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TAPseq_1.0.0.tar.gz && rm -rf TAPseq.buildbin-libdir && mkdir TAPseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TAPseq.buildbin-libdir TAPseq_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TAPseq_1.0.0.zip && rm TAPseq_1.0.0.tar.gz TAPseq_1.0.0.zip
StartedAt: 2020-10-16 19:07:19 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:08:40 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 80.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TAPseq_1.0.0.tar.gz && rm -rf TAPseq.buildbin-libdir && mkdir TAPseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TAPseq.buildbin-libdir TAPseq_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TAPseq_1.0.0.zip && rm TAPseq_1.0.0.tar.gz TAPseq_1.0.0.zip
###
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100 2015k  100 2015k    0     0  17.1M      0 --:--:-- --:--:-- --:--:-- 18.2M

install for i386

* installing *source* package 'TAPseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TAPseq'
    finding HTML links ... done
    TAPseq                                  html  
    TAPseqInput                             html  
    TsIO-class                              html  
    TsIOList-class                          html  
    accessors                               html  
    bone_marrow_genex                       html  
    checkPrimers                            html  
    check_tool_installation                 html  
    chr11_genes                             html  
    chr11_polyA_sites                       html  
    chr11_primers                           html  
    chr11_truncated_txs                     html  
    chr11_truncated_txs_seq                 html  
    createIORecord                          html  
    designPrimers                           html  
    estimateOffTargets                      html  
    exportPrimers                           html  
    getTxsSeq                               html  
    get_gt_sequences                        html  
    inferPolyASites                         html  
    parsePrimer3Output                      html  
    pickPrimers                             html  
    selectTargetGenes                       html  
    truncateTxsPolyA                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Following software required by TAPseq is not installed or not in PATH:

	primer3_core
	makeblastdb
	blastn

Please install these tools before trying to use this package!
** testing if installed package can be loaded from final location
Warning: Following software required by TAPseq is not installed or not in PATH:

	primer3_core
	makeblastdb
	blastn

Please install these tools before trying to use this package!
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TAPseq' ...
** testing if installed package can be loaded
Warning: Following software required by TAPseq is not installed or not in PATH:

	primer3_core
	makeblastdb
	blastn

Please install these tools before trying to use this package!
* MD5 sums
packaged installation of 'TAPseq' as TAPseq_1.0.0.zip
* DONE (TAPseq)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'TAPseq' successfully unpacked and MD5 sums checked