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BUILD report for QUALIFIER on celaya2

This page was generated on 2020-01-16 13:34:36 -0500 (Thu, 16 Jan 2020).

Package 1346/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QUALIFIER 1.31.1
Mike Jiang
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/QUALIFIER
Branch: master
Last Commit: 02fc0ff
Last Changed Date: 2019-11-18 09:03:28 -0500 (Mon, 18 Nov 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: QUALIFIER
Version: 1.31.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data QUALIFIER
StartedAt: 2020-01-15 20:45:19 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 20:45:53 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 33.4 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data QUALIFIER
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* checking for file ‘QUALIFIER/DESCRIPTION’ ... OK
* preparing ‘QUALIFIER’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QUALIFIER.Rmd’ using rmarkdown
Loading required package: flowCore
Loading required package: flowViz
Loading required package: lattice
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: flowWorkspace
As part of improvements to flowWorkspace, some behavior of
GatingSet objects has changed. For details, please read the section
titled "The cytoframe and cytoset classes" in the package vignette:

  vignette("flowWorkspace-Introduction", "flowWorkspace")
Loading required package: data.table
Loading required package: reshape

Attaching package: 'reshape'

The following object is masked from 'package:data.table':

    melt

Quitting from lines 125-130 (QUALIFIER.Rmd) 
Error: processing vignette 'QUALIFIER.Rmd' failed with diagnostics:
external pointer is not valid
--- failed re-building ‘QUALIFIER.Rmd’

SUMMARY: processing the following file failed:
  ‘QUALIFIER.Rmd’

Error: Vignette re-building failed.
Execution halted