Rurika Oka
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/MutationalPatterns |
| Branch: RELEASE_3_11 |
| Last Commit: ad0aadd |
| Last Changed Date: 2020-04-27 15:02:55 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:14 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MutationalPatterns PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1162/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MutationalPatterns 2.0.0 Rurika Oka
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: MutationalPatterns |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MutationalPatterns_2.0.0.tar.gz && rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MutationalPatterns_2.0.0.zip && rm MutationalPatterns_2.0.0.tar.gz MutationalPatterns_2.0.0.zip |
| StartedAt: 2020-10-16 19:21:42 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:23:38 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 115.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MutationalPatterns_2.0.0.tar.gz && rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MutationalPatterns_2.0.0.zip && rm MutationalPatterns_2.0.0.tar.gz MutationalPatterns_2.0.0.zip
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install for i386
* installing *source* package 'MutationalPatterns' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MutationalPatterns'
finding HTML links ... done
MutationalPatterns-package html
binomial_test html
cluster_signatures html
cos_sim html
cos_sim_matrix html
enrichment_depletion_test html
explained_by_signatures html
extract_signatures html
fit_to_signatures html
genomic_distribution html
mut_context html
mut_matrix html
mut_matrix_stranded html
mut_strand html
mut_type html
mut_type_occurrences html
mutation_context html
mutation_types html
mutations_from_vcf html
plot_192_profile html
plot_96_profile html
plot_compare_profiles html
plot_contribution html
plot_contribution_heatmap html
plot_cosine_heatmap html
plot_enrichment_depletion html
plot_rainfall html
plot_signature_strand_bias html
plot_spectrum html
plot_strand html
plot_strand_bias html
read_vcfs_as_granges html
strand_bias_test html
strand_from_vcf html
strand_occurrences html
type_context html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MutationalPatterns' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MutationalPatterns' as MutationalPatterns_2.0.0.zip
* DONE (MutationalPatterns)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MutationalPatterns' successfully unpacked and MD5 sums checked