Seonggyun Han
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/IVAS |
| Branch: RELEASE_3_11 |
| Last Commit: cbcc1ba |
| Last Changed Date: 2020-04-27 14:46:31 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:55 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE IVAS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 910/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IVAS 2.8.0 Seonggyun Han
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: IVAS |
| Version: 2.8.0 |
| Command: rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.8.0.tar.gz |
| StartedAt: 2020-10-17 10:50:54 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 10:52:24 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 90.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: IVAS_2.8.0.zip |
| PackageFileSize: 677.5 KiB |
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### Running command:
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### rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.8.0.tar.gz
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install for i386
* installing *source* package 'IVAS' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: next used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'IVAS'
finding HTML links ... done
ASdb-class html
CalSigSNP html
IVAS-deprecated html
IVAS-package html
MsqtlFinder html
RatioFromFPKM html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpk17CzF/R.INSTALL141cbe1709e/IVAS/man/RatioFromFPKM.Rd:46: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Splicingfinder html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpk17CzF/R.INSTALL141cbe1709e/IVAS/man/Splicingfinder.Rd:41: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic
calSignificant html
chrseparate html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpk17CzF/R.INSTALL141cbe1709e/IVAS/man/chrseparate.Rd:31: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic
findAlternative html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpk17CzF/R.INSTALL141cbe1709e/IVAS/man/findAlternative.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpk17CzF/R.INSTALL141cbe1709e/IVAS/man/findAlternative.Rd:45: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
findOversnp html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpk17CzF/R.INSTALL141cbe1709e/IVAS/man/findOversnp.Rd:29: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
sQTLsFinder html
sampleexp html
samplesnp html
samplesnplocus html
saveBplot html
sqtlfinder html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'IVAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IVAS' as IVAS_2.8.0.zip
* DONE (IVAS)