| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:54:43 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE EnrichmentBrowser PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 545/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EnrichmentBrowser 2.18.2 Ludwig Geistlinger
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: EnrichmentBrowser |
| Version: 2.18.2 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:EnrichmentBrowser.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings EnrichmentBrowser_2.18.2.tar.gz |
| StartedAt: 2020-10-17 01:03:39 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 01:09:05 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 326.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EnrichmentBrowser.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:EnrichmentBrowser.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings EnrichmentBrowser_2.18.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/EnrichmentBrowser.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK
* this is package ‘EnrichmentBrowser’ version ‘2.18.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnrichmentBrowser’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ebrowser 71.464 1.092 75.273
getGenesets 16.651 0.100 20.657
eaBrowse 11.652 0.321 16.294
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.11-bioc/meat/EnrichmentBrowser.Rcheck/00check.log’
for details.
EnrichmentBrowser.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL EnrichmentBrowser ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘EnrichmentBrowser’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EnrichmentBrowser)
EnrichmentBrowser.Rcheck/EnrichmentBrowser-Ex.timings
| name | user | system | elapsed | |
| combResults | 0.983 | 0.024 | 1.008 | |
| compileGRN | 3.872 | 0.064 | 3.972 | |
| configEBrowser | 0.000 | 0.000 | 0.001 | |
| deAna | 4.822 | 0.144 | 4.994 | |
| downloadPathways | 0 | 0 | 0 | |
| eaBrowse | 11.652 | 0.321 | 16.294 | |
| ebrowser | 71.464 | 1.092 | 75.273 | |
| getGenesets | 16.651 | 0.100 | 20.657 | |
| ggeaGraph | 3.249 | 0.016 | 3.265 | |
| idMap | 0.555 | 0.044 | 0.620 | |
| isAvailable | 0 | 0 | 0 | |
| makeExampleData | 0.029 | 0.000 | 0.028 | |
| nbea | 0.282 | 0.004 | 0.286 | |
| normalize | 0.745 | 0.004 | 0.764 | |
| plots | 1.211 | 0.016 | 1.228 | |
| probe2gene | 0.134 | 0.004 | 0.138 | |
| readSE | 0.088 | 0.000 | 0.088 | |
| sbea | 0.329 | 0.008 | 0.345 | |