| Back to Multiple platform build/check report for BioC 3.11 | 
 | 
This page was generated on 2020-10-17 11:56:30 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE EDDA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 527/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EDDA 1.26.0 Chia Kuan Hui Burton 
 | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK |  | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |  | 
| Package: EDDA | 
| Version: 1.26.0 | 
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/EDDA_1.26.0.tar.gz && rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EDDA.buildbin-libdir EDDA_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL EDDA_1.26.0.zip && rm EDDA_1.26.0.tar.gz EDDA_1.26.0.zip | 
| StartedAt: 2020-10-16 17:53:58 -0400 (Fri, 16 Oct 2020) | 
| EndedAt: 2020-10-16 17:55:42 -0400 (Fri, 16 Oct 2020) | 
| EllapsedTime: 104.2 seconds | 
| RetCode: 0 | 
| Status: OK | 
##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/EDDA_1.26.0.tar.gz && rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EDDA.buildbin-libdir EDDA_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL EDDA_1.26.0.zip && rm EDDA_1.26.0.tar.gz EDDA_1.26.0.zip
###
##############################################################################
##############################################################################
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1791k  100 1791k    0     0  14.5M      0 --:--:-- --:--:-- --:--:-- 15.4M
install for i386
* installing *source* package 'EDDA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cuffdiff.cpp -o cuffdiff.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o EDDA.dll tmp.def cuffdiff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/EDDA.buildbin-libdir/00LOCK-EDDA/00new/EDDA/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2 
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
Note: possible error in 'exactTestByDeviance(y1, ': unused argument (big.count = big.count) 
Note: possible error in 'exactTestBySmallP(y1, ': unused argument (big.count = big.count) 
** help
*** installing help indices
  converting help for package 'EDDA'
    finding HTML links ... done
    BP                                      html  
    EDDA-package                            html  
    HBR                                     html  
    SingleCell                              html  
    Wu                                      html  
    computeAUC                              html  
    generateData                            html  
    plotPRC                                 html  
    plotROC                                 html  
    testDATs                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'EDDA' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cuffdiff.cpp -o cuffdiff.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o EDDA.dll tmp.def cuffdiff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/EDDA.buildbin-libdir/EDDA/libs/x64
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
* MD5 sums
packaged installation of 'EDDA' as EDDA_1.26.0.zip
* DONE (EDDA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'EDDA' successfully unpacked and MD5 sums checked