| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:30 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE EDDA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 527/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EDDA 1.26.0 Chia Kuan Hui Burton
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
| Package: EDDA |
| Version: 1.26.0 |
| Command: rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EDDA.buildbin-libdir EDDA_1.26.0.tar.gz |
| StartedAt: 2020-10-17 10:24:15 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 10:25:20 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 64.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: EDDA_1.26.0.zip |
| PackageFileSize: 2.715 MiB |
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### Running command:
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### rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EDDA.buildbin-libdir EDDA_1.26.0.tar.gz
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install for i386
* installing *source* package 'EDDA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cuffdiff.cpp -o cuffdiff.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o EDDA.dll tmp.def cuffdiff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/EDDA.buildbin-libdir/00LOCK-EDDA/00new/EDDA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
Note: possible error in 'exactTestByDeviance(y1, ': unused argument (big.count = big.count)
Note: possible error in 'exactTestBySmallP(y1, ': unused argument (big.count = big.count)
** help
*** installing help indices
converting help for package 'EDDA'
finding HTML links ... done
BP html
EDDA-package html
HBR html
SingleCell html
Wu html
computeAUC html
generateData html
plotPRC html
plotROC html
testDATs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'EDDA' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cuffdiff.cpp -o cuffdiff.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o EDDA.dll tmp.def cuffdiff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/EDDA.buildbin-libdir/EDDA/libs/x64
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
No methods found in package 'baySeq' for request: 'rbind' when loading 'EDDA'
* MD5 sums
packaged installation of 'EDDA' as EDDA_1.26.0.zip
* DONE (EDDA)