| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-05-30 15:08:30 -0400 (Sat, 30 May 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CountClust PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 383/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CountClust 1.16.0 Kushal Dey
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: CountClust |
| Version: 1.16.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CountClust.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CountClust_1.16.0.tar.gz |
| StartedAt: 2020-05-30 04:19:31 -0400 (Sat, 30 May 2020) |
| EndedAt: 2020-05-30 04:23:10 -0400 (Sat, 30 May 2020) |
| EllapsedTime: 219.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CountClust.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CountClust.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CountClust_1.16.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/CountClust.Rcheck’
* using R version 4.0.0 (2020-04-24)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CountClust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CountClust’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CountClust’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.7Mb
sub-directories of 1Mb or more:
data 7.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FitGoM 46.834 8.011 54.888
nullmodel_GoM 28.727 7.267 36.082
compGoM 11.136 1.323 12.830
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.11-bioc/meat/CountClust.Rcheck/00check.log’
for details.
CountClust.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CountClust ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘CountClust’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CountClust)
CountClust.Rcheck/CountClust-Ex.timings
| name | user | system | elapsed | |
| BatchCorrectedCounts | 1.279 | 0.083 | 1.363 | |
| ExtractTopFeatures | 3.291 | 0.100 | 3.391 | |
| FitGoM | 46.834 | 8.011 | 54.888 | |
| RemoveSparseFeatures | 0.001 | 0.001 | 0.002 | |
| StructureGGplot | 1.000 | 0.028 | 1.029 | |
| compGoM | 11.136 | 1.323 | 12.830 | |
| compare_omega | 0.057 | 0.001 | 0.059 | |
| handleNA | 0.002 | 0.002 | 0.004 | |
| nullmodel_GoM | 28.727 | 7.267 | 36.082 | |