| Back to Multiple platform build/check report for BioC 3.11 | 
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This page was generated on 2020-10-17 11:54:37 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CountClust PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 383/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CountClust 1.16.0 Kushal Dey 
 | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] |  | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | 
| Package: CountClust | 
| Version: 1.16.0 | 
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:CountClust.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings CountClust_1.16.0.tar.gz | 
| StartedAt: 2020-10-17 00:17:34 -0400 (Sat, 17 Oct 2020) | 
| EndedAt: 2020-10-17 00:20:08 -0400 (Sat, 17 Oct 2020) | 
| EllapsedTime: 153.5 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: CountClust.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:CountClust.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings CountClust_1.16.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/CountClust.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CountClust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CountClust’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CountClust’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data   7.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
FitGoM        33.520  0.684  34.220
nullmodel_GoM 20.107  0.020  20.128
compGoM        9.061  0.408   9.747
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.11-bioc/meat/CountClust.Rcheck/00check.log’
for details.
CountClust.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL CountClust ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘CountClust’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CountClust)
CountClust.Rcheck/CountClust-Ex.timings
| name | user | system | elapsed | |
| BatchCorrectedCounts | 1.040 | 0.016 | 1.056 | |
| ExtractTopFeatures | 2.044 | 0.060 | 2.103 | |
| FitGoM | 33.520 | 0.684 | 34.220 | |
| RemoveSparseFeatures | 0.000 | 0.002 | 0.001 | |
| StructureGGplot | 0.848 | 0.004 | 0.853 | |
| compGoM | 9.061 | 0.408 | 9.747 | |
| compare_omega | 0.028 | 0.000 | 0.028 | |
| handleNA | 0.001 | 0.000 | 0.001 | |
| nullmodel_GoM | 20.107 | 0.020 | 20.128 | |