CellMapper 1.13.0
Brad Nelms
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/CellMapper |
| Branch: master |
| Last Commit: 77b4358 |
| Last Changed Date: 2019-12-18 02:30:57 -0500 (Wed, 18 Dec 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CellMapper
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* checking for file ‘CellMapper/DESCRIPTION’ ... OK
* preparing ‘CellMapper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CellMapper.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
snapshotDate(): 2020-01-08
Warning: replacing previous import ‘stats::sd’ by ‘S4Vectors::sd’ when loading ‘CellMapper’
Warning: replacing previous import ‘stats::var’ by ‘S4Vectors::var’ when loading ‘CellMapper’
see ?CellMapperData and browseVignettes('CellMapperData') for documentation
loading from cache
snapshotDate(): 2020-01-08
see ?CellMapperData and browseVignettes('CellMapperData') for documentation
loading from cache
* Running CellMapper with query gene(s) '2571'...
see ?CellMapperData and browseVignettes('CellMapperData') for documentation
loading from cache
Warning: file ‘ea9336f8e8ce_171’ has magic number 'X'
Use of save versions prior to 2 is deprecated
Error: processing vignette 'CellMapper.Rnw' failed with diagnostics:
chunk 12
Error : failed to load resource
name: EH171
title: Pre-processed microarray data from the Affymetrix HG-U133PlusV2 platform
reason: bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building ‘CellMapper.Rnw’
SUMMARY: processing the following file failed:
‘CellMapper.Rnw’
Error: Vignette re-building failed.
Execution halted