Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for scHOT on tokay2

This page was generated on 2020-10-17 11:57:45 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE scHOT PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1596/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scHOT 1.0.0
Shila Ghazanfar
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/scHOT
Branch: RELEASE_3_11
Last Commit: 4c7aab3
Last Changed Date: 2020-04-27 15:35:40 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: scHOT
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scHOT_1.0.0.tar.gz && rm -rf scHOT.buildbin-libdir && mkdir scHOT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scHOT.buildbin-libdir scHOT_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scHOT_1.0.0.zip && rm scHOT_1.0.0.tar.gz scHOT_1.0.0.zip
StartedAt: 2020-10-16 18:25:26 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:27:11 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 105.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scHOT_1.0.0.tar.gz && rm -rf scHOT.buildbin-libdir && mkdir scHOT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scHOT.buildbin-libdir scHOT_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scHOT_1.0.0.zip && rm scHOT_1.0.0.tar.gz scHOT_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 5759k  100 5759k    0     0  49.1M      0 --:--:-- --:--:-- --:--:-- 52.0M

install for i386

* installing *source* package 'scHOT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scHOT'
    finding HTML links ... done
    MOB_subset                              html  
    liver                                   html  
    params-set                              html  
    plotColouredExpression                  html  
    plotEgoNetwork                          html  
    plotHigherOrderSequence                 html  
    plotOrderedExpression                   html  
    positionColData-set                     html  
    positionType-set                        html  
    scHOT-class                             html  
    scHOT                                   html  
    scHOT_addTestingScaffold                html  
    scHOT_buildFromMatrix                   html  
    scHOT_buildFromSCE                      html  
    scHOT_calculateGlobalHigherOrderFunction
                                            html  
    scHOT_calculateHigherOrderTestStatistics
                                            html  
    scHOT_estimatePvalues                   html  
    scHOT_output-set                        html  
    scHOT_performPermutationTest            html  
    scHOT_plotPermutationDistributions      html  
    scHOT_setPermutationScaffold            html  
    scHOT_setWeightMatrix                   html  
    scHOT_stripOutput                       html  
    spatialWeightMatrix                     html  
    testingScaffold-set                     html  
    thin                                    html  
    trajectoryWeightMatrix                  html  
    weightMatrix-set                        html  
    weightedPearson                         html  
    weightedSpearman                        html  
    weightedVariance                        html  
    weightedZIKendall                       html  
    weightedZISpearman                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scHOT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scHOT' as scHOT_1.0.0.zip
* DONE (scHOT)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'scHOT' successfully unpacked and MD5 sums checked