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INSTALL report for methrix on tokay2

This page was generated on 2020-10-17 11:57:04 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE methrix PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1052/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methrix 1.2.06
Anand Mayakonda
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/methrix
Branch: RELEASE_3_11
Last Commit: ccc4e39
Last Changed Date: 2020-05-30 06:15:39 -0400 (Sat, 30 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: methrix
Version: 1.2.06
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methrix_1.2.06.tar.gz && rm -rf methrix.buildbin-libdir && mkdir methrix.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methrix.buildbin-libdir methrix_1.2.06.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methrix_1.2.06.zip && rm methrix_1.2.06.tar.gz methrix_1.2.06.zip
StartedAt: 2020-10-16 18:49:03 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:50:32 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 89.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methrix_1.2.06.tar.gz && rm -rf methrix.buildbin-libdir && mkdir methrix.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methrix.buildbin-libdir methrix_1.2.06.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methrix_1.2.06.zip && rm methrix_1.2.06.tar.gz methrix_1.2.06.zip
###
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100 2471k  100 2471k    0     0  14.4M      0 --:--:-- --:--:-- --:--:-- 14.9M

install for i386

* installing *source* package 'methrix' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methrix'
    finding HTML links ... done
    combine_methrix                         html  
    convert_HDF5_methrix                    html  
    convert_methrix                         html  
    coverage_filter                         html  
    extract_CPGs                            html  
    get_matrix                              html  
    get_region_summary                      html  
    finding level-2 HTML links ... done

    get_stats                               html  
    load_HDF5_methrix                       html  
    mask_methrix                            html  
    methrix-class                           html  
    methrix2bsseq                           html  
    methrix_data                            html  
    methrix_pca                             html  
    methrix_report                          html  
    order_by_sd                             html  
    plot_coverage                           html  
    plot_density                            html  
    plot_pca                                html  
    plot_stats                              html  
    plot_violin                             html  
    read_bedgraphs                          html  
    region_filter                           html  
    remove_snps                             html  
    remove_uncovered                        html  
    save_HDF5_methrix                       html  
    subset_methrix                          html  
    write_bedgraphs                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methrix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methrix' as methrix_1.2.06.zip
* DONE (methrix)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methrix' successfully unpacked and MD5 sums checked