Julian Gehring
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SomaticSignatures |
| Branch: RELEASE_3_11 |
| Last Commit: 4633cef |
| Last Changed Date: 2020-04-27 14:38:15 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:50 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SomaticSignatures PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1698/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SomaticSignatures 2.24.0 Julian Gehring
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SomaticSignatures |
| Version: 2.24.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SomaticSignatures_2.24.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.24.0.zip && rm SomaticSignatures_2.24.0.tar.gz SomaticSignatures_2.24.0.zip |
| StartedAt: 2020-10-16 19:33:08 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:35:34 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 146.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SomaticSignatures_2.24.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.24.0.zip && rm SomaticSignatures_2.24.0.tar.gz SomaticSignatures_2.24.0.zip
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install for i386
* installing *source* package 'SomaticSignatures' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SomaticSignatures'
finding HTML links ... done
MutationalSignatures-class html
SomaticSignatures-package html
cluster-spetrum html
decomposition-functions html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8iIRL7/R.INSTALL254c32d469a5/SomaticSignatures/man/decomposition-functions.Rd:75: file link 'NMF' in package 'NMF' does not exist and so has been treated as a topic
gc html
granges-utils html
finding level-2 HTML links ... done
hs-chrs html
kmers-data html
kmers html
motif-functions html
mutation-context html
mutation-distribution html
mutational-normalization html
mutational-plots html
mutational-signatures html
mutect html
number-signatures html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8iIRL7/R.INSTALL254c32d469a5/SomaticSignatures/man/number-signatures.Rd:98: file link 'evar' in package 'NMF' does not exist and so has been treated as a topic
sca-data html
signature-plot-functions html
signatures21-data html
utils html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.24.0.zip
* DONE (SomaticSignatures)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked