| Back to Multiple platform build/check report for BioC 3.11 | 
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This page was generated on 2020-10-17 11:55:39 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RUVcorr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1559/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RUVcorr 1.20.0 Saskia Freytag 
  | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | 
| Package: RUVcorr | 
| Version: 1.20.0 | 
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings RUVcorr_1.20.0.tar.gz | 
| StartedAt: 2020-10-17 05:06:08 -0400 (Sat, 17 Oct 2020) | 
| EndedAt: 2020-10-17 05:06:54 -0400 (Sat, 17 Oct 2020) | 
| EllapsedTime: 46.5 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: RUVcorr.Rcheck | 
| Warnings: 0 | 
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings RUVcorr_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/RUVcorr.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RUVcorr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RUVcorr’ version ‘1.20.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RUVcorr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RUVcorr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL RUVcorr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘RUVcorr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RUVcorr)
RUVcorr.Rcheck/RUVcorr-Ex.timings
| name | user | system | elapsed | |
| ECDFPlot | 0.614 | 0.012 | 0.626 | |
| PCAPlot | 1.401 | 0.004 | 1.405 | |
| RLEPlot | 1.617 | 0.012 | 1.629 | |
| RUVNaiveRidge | 0.391 | 0.008 | 0.399 | |
| assessQuality | 0.064 | 0.004 | 0.067 | |
| background | 0.059 | 0.000 | 0.059 | |
| calculateThreshold | 1.121 | 0.004 | 1.125 | |
| compareRanks | 0.784 | 0.000 | 0.785 | |
| correlationPlot | 0.106 | 0.004 | 0.109 | |
| eigenvaluePlot | 0.225 | 0.000 | 0.225 | |
| empNegativeControls | 0.157 | 0.004 | 0.160 | |
| findWeights | 0.276 | 0.000 | 0.275 | |
| genePlot | 0.18 | 0.00 | 0.18 | |
| histogramPlot | 0.247 | 0.000 | 0.247 | |
| is.optimizeParameters | 0.000 | 0.000 | 0.001 | |
| is.simulateGEdata | 0 | 0 | 0 | |
| optimizeParameters | 1.412 | 0.002 | 1.414 | |
| plot.optimizeParameters | 1.750 | 0.005 | 1.763 | |
| plotDesign | 0.688 | 0.008 | 0.720 | |
| plotThreshold | 1.321 | 0.000 | 1.321 | |
| print.simulateGEdata | 0 | 0 | 0 | |
| prioritise | 0.392 | 0.000 | 0.391 | |
| simulateGEdata | 0.312 | 0.008 | 0.320 | |
| wcor | 0.385 | 0.000 | 0.385 | |