Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:22 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE PepsNMR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1292/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PepsNMR 1.6.1 Manon Martin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: PepsNMR |
Version: 1.6.1 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings PepsNMR_1.6.1.tar.gz |
StartedAt: 2020-10-17 04:00:59 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:11:35 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 636.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PepsNMR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings PepsNMR_1.6.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/PepsNMR.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PepsNMR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PepsNMR’ version ‘1.6.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PepsNMR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed PEPSNMR-package 276.124 1.786 279.627 PreprocessingChain 274.533 0.051 275.009 Warping 10.826 0.000 10.827 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
name | user | system | elapsed | |
Apodization | 0.807 | 0.077 | 1.072 | |
BaselineCorrection | 0.626 | 0.028 | 0.654 | |
Bucketing | 0.115 | 0.000 | 0.115 | |
Draw | 1.557 | 0.008 | 1.565 | |
DrawPCA | 0.897 | 0.004 | 0.901 | |
DrawSignal | 0.497 | 0.004 | 0.501 | |
FirstOrderPhaseCorrection | 0.036 | 0.004 | 0.039 | |
FourierTransform | 0.032 | 0.004 | 0.036 | |
GroupDelayCorrection | 0.031 | 0.004 | 0.035 | |
InternalReferencing | 0.029 | 0.004 | 0.033 | |
NegativeValuesZeroing | 0.009 | 0.000 | 0.009 | |
Normalization | 0.007 | 0.000 | 0.008 | |
PEPSNMR-package | 276.124 | 1.786 | 279.627 | |
PreprocessingChain | 274.533 | 0.051 | 275.009 | |
ReadFids | 0.338 | 0.004 | 0.342 | |
RegionRemoval | 0.012 | 0.000 | 0.012 | |
SolventSuppression | 0.144 | 0.000 | 0.144 | |
Warping | 10.826 | 0.000 | 10.827 | |
WindowSelection | 0.024 | 0.000 | 0.023 | |
ZeroFilling | 0.069 | 0.000 | 0.070 | |
ZeroOrderPhaseCorrection | 0.055 | 0.000 | 0.056 | |
ZoneAggregation | 0.393 | 0.012 | 0.561 | |