| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:11 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PepsNMR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1292/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PepsNMR 1.6.1 Manon Martin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: PepsNMR |
| Version: 1.6.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.6.1.tar.gz |
| StartedAt: 2020-10-17 03:51:33 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 04:04:46 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 793.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PepsNMR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.6.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/PepsNMR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.6.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PEPSNMR-package 325.628 14.958 341.055
PreprocessingChain 325.329 14.570 340.770
Warping 13.996 1.231 15.240
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
| name | user | system | elapsed | |
| Apodization | 0.753 | 0.076 | 0.832 | |
| BaselineCorrection | 0.614 | 0.131 | 0.746 | |
| Bucketing | 0.122 | 0.003 | 0.125 | |
| Draw | 1.467 | 0.064 | 1.535 | |
| DrawPCA | 0.845 | 0.025 | 0.870 | |
| DrawSignal | 0.836 | 0.020 | 0.896 | |
| FirstOrderPhaseCorrection | 0.050 | 0.007 | 0.058 | |
| FourierTransform | 0.049 | 0.013 | 0.062 | |
| GroupDelayCorrection | 0.053 | 0.006 | 0.059 | |
| InternalReferencing | 0.053 | 0.007 | 0.060 | |
| NegativeValuesZeroing | 0.013 | 0.001 | 0.014 | |
| Normalization | 0.01 | 0.00 | 0.01 | |
| PEPSNMR-package | 325.628 | 14.958 | 341.055 | |
| PreprocessingChain | 325.329 | 14.570 | 340.770 | |
| ReadFids | 0.426 | 0.030 | 0.458 | |
| RegionRemoval | 0.012 | 0.001 | 0.014 | |
| SolventSuppression | 0.143 | 0.034 | 0.178 | |
| Warping | 13.996 | 1.231 | 15.240 | |
| WindowSelection | 0.034 | 0.001 | 0.036 | |
| ZeroFilling | 0.101 | 0.001 | 0.102 | |
| ZeroOrderPhaseCorrection | 0.105 | 0.027 | 0.133 | |
| ZoneAggregation | 0.403 | 0.012 | 0.418 | |