Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:16 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE NormqPCR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1202/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
NormqPCR 1.34.0 James Perkins
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: NormqPCR |
Version: 1.34.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings NormqPCR_1.34.0.tar.gz |
StartedAt: 2020-10-17 03:42:27 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 03:44:28 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 121.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NormqPCR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings NormqPCR_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/NormqPCR.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NormqPCR/DESCRIPTION’ ... OK * this is package ‘NormqPCR’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NormqPCR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CqValues,CyclesSet: no visible binding for global variable ‘l5’ Undefined global functions or variables: l5 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CqValues 46.334 0.091 46.482 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.11-bioc/meat/NormqPCR.Rcheck/00check.log’ for details.
NormqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL NormqPCR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘NormqPCR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘NormqPCR.Rnw’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NormqPCR)
NormqPCR.Rcheck/NormqPCR-Ex.timings
name | user | system | elapsed | |
Bladder | 0.022 | 0.003 | 0.027 | |
BladderRepro | 0.006 | 0.003 | 0.010 | |
Colon | 0.011 | 0.001 | 0.011 | |
ComputeNRQs | 0.359 | 0.000 | 0.389 | |
CqValues | 46.334 | 0.091 | 46.482 | |
NormqPCR-package | 0 | 0 | 0 | |
combineTechReps | 0.047 | 0.000 | 0.059 | |
combineTechRepsSD | 0.072 | 0.000 | 0.071 | |
deltaCt | 0.102 | 0.000 | 0.105 | |
deltaDeltaCt | 0.135 | 0.000 | 0.135 | |
geNorm | 0.008 | 0.000 | 0.008 | |
geomMean | 0.001 | 0.000 | 0.001 | |
makeAllNAs | 0.085 | 0.000 | 0.085 | |
makeAllNewVal | 0.081 | 0.003 | 0.085 | |
replaceAboveCutOff | 0.126 | 0.000 | 0.126 | |
replaceNAs | 0.138 | 0.000 | 0.138 | |
selectHKs | 0.041 | 0.004 | 0.045 | |
stabMeasureM | 0.185 | 0.000 | 0.185 | |
stabMeasureRho | 0.126 | 0.019 | 0.146 | |