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BUILD report for MOSim on celaya2

This page was generated on 2020-01-16 13:55:08 -0500 (Thu, 16 Jan 2020).

Package 1081/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MOSim 1.1.0
Carlos Martínez
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/MOSim
Branch: master
Last Commit: 15af082
Last Changed Date: 2019-10-29 13:43:38 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: MOSim
Version: 1.1.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MOSim
StartedAt: 2020-01-16 00:52:45 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 00:54:43 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 118.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MOSim
###
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* checking for file ‘MOSim/DESCRIPTION’ ... OK
* preparing ‘MOSim’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MOSim.Rnw’ using knitr
Generating simulation settings for RNA-seq.
Finishing generation of configuration settings.
Configuration generated.

Starting simulation of RNA-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding RNA-seq count values.
Configuring simulator DNase-seq
Generating simulation settings for RNA-seq.
Generating simulation settings for DNase-seq.
- Linking to gene classes...
- Adjusting regulator effect
Finishing generation of configuration settings.
Configuration generated.

Starting simulation of RNA-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding RNA-seq count values.
Starting simulation of DNase-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding DNase-seq count values.
Generating simulation settings for RNA-seq.
Generating simulation settings for DNase-seq.
- Linking to gene classes...
- Adjusting regulator effect
Finishing generation of configuration settings.
Configuration generated.

Starting simulation of RNA-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding RNA-seq count values.
Starting simulation of DNase-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding DNase-seq count values.
Generating simulation settings for RNA-seq.
Creating settings to change count values on 1 DE genes with the same flat profile on all groups.
Finishing generation of configuration settings.
Configuration generated.

Starting simulation of RNA-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding RNA-seq count values.
Configuring simulator DNase-seq
Generating simulation settings for RNA-seq.
Generating simulation settings for DNase-seq.
- Linking to gene classes...
- Adjusting regulator effect
Finishing generation of configuration settings.
Configuration generated.

Starting simulation of RNA-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding RNA-seq count values.
Starting simulation of DNase-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding DNase-seq count values.
Generating simulation settings for RNA-seq.
Finishing generation of configuration settings.
Configuration generated.

Starting simulation of RNA-seq.
- Simulating count values for group 1.
	- Making replicates for group 1 on time 0.
	- Making replicates for group 1 on time 2.
	- Making replicates for group 1 on time 4.
	- Making replicates for group 1 on time 12.
	- Making replicates for group 1 on time 24.
- Simulating count values for group 2.
	- Making replicates for group 2 on time 0.
	- Making replicates for group 2 on time 2.
	- Making replicates for group 2 on time 4.
	- Making replicates for group 2 on time 12.
	- Making replicates for group 2 on time 24.
Rounding RNA-seq count values.
Error: processing vignette 'MOSim.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'MOSim.tex' failed.
LaTeX errors:
! Package inputenc Error: Unicode character ∗ (U+2217)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
--- failed re-building ‘MOSim.Rnw’

SUMMARY: processing the following file failed:
  ‘MOSim.Rnw’

Error: Vignette re-building failed.
Execution halted