Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:48 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE GSVA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 791/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GSVA 1.36.3 Justin Guinney
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: GSVA |
Version: 1.36.3 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GSVA_1.36.3.tar.gz && rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSVA.buildbin-libdir GSVA_1.36.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GSVA_1.36.3.zip && rm GSVA_1.36.3.tar.gz GSVA_1.36.3.zip |
StartedAt: 2020-10-16 18:22:14 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:22:57 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 43.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GSVA_1.36.3.tar.gz && rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSVA.buildbin-libdir GSVA_1.36.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GSVA_1.36.3.zip && rm GSVA_1.36.3.tar.gz GSVA_1.36.3.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 899k 100 899k 0 0 5056k 0 --:--:-- --:--:-- --:--:-- 5258k install for i386 * installing *source* package 'GSVA' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:24:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register_cmethods.c -o register_cmethods.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/GSVA.buildbin-libdir/00LOCK-GSVA/00new/GSVA/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GSVA' finding HTML links ... done computeGeneSetsOverlap html filterGeneSets html gsva html finding level-2 HTML links ... done igsva html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GSVA' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:24:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register_cmethods.c -o register_cmethods.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/GSVA.buildbin-libdir/GSVA/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GSVA' as GSVA_1.36.3.zip * DONE (GSVA) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'GSVA' successfully unpacked and MD5 sums checked