Bernd Klaus
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/DChIPRep |
| Branch: RELEASE_3_11 |
| Last Commit: 51f779c |
| Last Changed Date: 2020-04-27 14:52:12 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:25 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE DChIPRep PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 426/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Bernd Klaus
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: DChIPRep |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DChIPRep_1.18.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.18.0.zip && rm DChIPRep_1.18.0.tar.gz DChIPRep_1.18.0.zip |
| StartedAt: 2020-10-16 19:23:05 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:25:38 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 153.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DChIPRep_1.18.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.18.0.zip && rm DChIPRep_1.18.0.tar.gz DChIPRep_1.18.0.zip
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install for i386
* installing *source* package 'DChIPRep' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DChIPRep'
finding HTML links ... done
DChIPRep html
DChIPRepResults html
DESeq2Data html
FDRresults html
TSS_galonska html
chip_galonska html
exampleChipData html
exampleInputData html
exampleSampleTable html
getMATfromDataFrame html
importData html
importDataFromMatrices html
importData_soGGi html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0CErle/R.INSTALL2d9c74ee13a7/DChIPRep/man/importData_soGGi.Rd:36: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0CErle/R.INSTALL2d9c74ee13a7/DChIPRep/man/importData_soGGi.Rd:14: file link 'GenomicRanges-class' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0CErle/R.INSTALL2d9c74ee13a7/DChIPRep/man/importData_soGGi.Rd:27: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0CErle/R.INSTALL2d9c74ee13a7/DChIPRep/man/importData_soGGi.Rd:65: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
input_galonska html
plotProfiles html
plotSignificance html
resultsDChIPRep html
robust_mean html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0CErle/R.INSTALL2d9c74ee13a7/DChIPRep/man/robust_mean.Rd:17: file link 'smhuber' in package 'smoothmest' does not exist and so has been treated as a topic
runTesting html
sample_table_galonska html
show html
summarizeCountsPerPosition html
testData html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DChIPRep' is deprecated and will be removed from Bioconductor
version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'DChIPRep' is deprecated and will be removed from Bioconductor
version 3.12
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DChIPRep' ...
** testing if installed package can be loaded
Warning: Package 'DChIPRep' is deprecated and will be removed from Bioconductor
version 3.12
* MD5 sums
packaged installation of 'DChIPRep' as DChIPRep_1.18.0.zip
* DONE (DChIPRep)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DChIPRep' successfully unpacked and MD5 sums checked