Package: HDCytoData

Version: 1.6.6

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings HDCytoData_1.6.6.tar.gz

StartedAt: 2020-04-14 13:49:46 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 13:54:01 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 254.5 seconds

RetCode: 0

Status:  OK

CheckDir: HDCytoData.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings HDCytoData_1.6.6.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/HDCytoData.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HDCytoData/DESCRIPTION’ ... OK
* this is package ‘HDCytoData’ version ‘1.6.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HDCytoData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
Samusik_all_SE            11.024  0.452  11.915
Bodenmiller_BCR_XL_SE      6.960  0.212   7.611
Levine_32dim_SE            5.696  0.120   6.165
Mosmann_rare_SE            5.684  0.092   6.156
Weber_AML_sim_main_5pc_SE  5.268  0.164   5.857
Weber_BCR_XL_sim_main_SE   4.896  0.084   5.392
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL HDCytoData
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘HDCytoData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2019-10-22
** testing if installed package can be loaded from final location
snapshotDate(): 2019-10-22
** testing if installed package keeps a record of temporary installation path
* DONE (HDCytoData)

name	user	system	elapsed
Bodenmiller_BCR_XL_SE	6.960	0.212	7.611
Krieg_Anti_PD_1_SE	4.520	0.076	4.991
Levine_13dim_SE	3.840	0.060	4.276
Levine_32dim_SE	5.696	0.120	6.165
Mosmann_rare_SE	5.684	0.092	6.156
Nilsson_rare_SE	3.720	0.044	4.205
Samusik_01_SE	4.116	0.092	4.825
Samusik_all_SE	11.024	0.452	11.915
Weber_AML_sim_main_5pc_SE	5.268	0.164	5.857
Weber_BCR_XL_sim_main_SE	4.896	0.084	5.392