Peter Humburg
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ChIPseqR |
| Branch: RELEASE_3_10 |
| Last Commit: 5619e8b |
| Last Changed Date: 2019-10-29 13:08:10 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:19:00 -0400 (Wed, 15 Apr 2020).
| Package 278/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChIPseqR 1.40.0 Peter Humburg
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: ChIPseqR |
| Version: 1.40.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ChIPseqR_1.40.0.tar.gz && rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPseqR.buildbin-libdir ChIPseqR_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ChIPseqR_1.40.0.zip && rm ChIPseqR_1.40.0.tar.gz ChIPseqR_1.40.0.zip |
| StartedAt: 2020-04-14 19:39:53 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:40:51 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 57.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ChIPseqR_1.40.0.tar.gz && rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPseqR.buildbin-libdir ChIPseqR_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ChIPseqR_1.40.0.zip && rm ChIPseqR_1.40.0.tar.gz ChIPseqR_1.40.0.zip
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install for i386
* installing *source* package 'ChIPseqR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66:15: warning: unused variable 'tmp_stat' [-Wunused-variable]
double stat, tmp_stat;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ChIPseqR.dll tmp.def startScore.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ChIPseqR.buildbin-libdir/00LOCK-ChIPseqR/00new/ChIPseqR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
No methods found in package 'IRanges' for request: 'score' when loading 'ChIPseqR'
** help
*** installing help indices
converting help for package 'ChIPseqR'
finding HTML links ... done
BindScore html
ChIPseqR-package html
RLEBindScore-class html
finding level-2 HTML links ... done
RLEReadCounts-class html
ReadCounts html
accessors html
alignFeature html
callBindingSites html
compress-BindScore html
compress-ReadCounts html
compress-methods html
decompress-methods html
decompress html
exportBindSequence html
getBindCor html
getBindLen html
getCutoff html
internal html
pickPeak html
plot-BindScore html
plot-ReadCounts html
plotReads html
plotWindow html
pos2gff html
simpleNucCall html
startScore html
strandPileup html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp0oln9f/R.INSTALL190c278230c5/ChIPseqR/man/strandPileup.Rd:29: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp0oln9f/R.INSTALL190c278230c5/ChIPseqR/man/strandPileup.Rd:46: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
windowCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
No methods found in package 'IRanges' for request: 'score' when loading 'ChIPseqR'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
No methods found in package 'IRanges' for request: 'score' when loading 'ChIPseqR'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChIPseqR' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66:15: warning: unused variable 'tmp_stat' [-Wunused-variable]
double stat, tmp_stat;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ChIPseqR.dll tmp.def startScore.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
No methods found in package 'IRanges' for request: 'score' when loading 'ChIPseqR'
* MD5 sums
packaged installation of 'ChIPseqR' as ChIPseqR_1.40.0.zip
* DONE (ChIPseqR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ChIPseqR' successfully unpacked and MD5 sums checked