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BioC 3.0: INSTALL report for gdsfmt on moscato1

This page was generated on 2015-04-10 09:51:45 -0700 (Fri, 10 Apr 2015).

Package 340/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gdsfmt 1.2.2
Xiuwen Zheng
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/gdsfmt
Last Changed Rev: 98410 / Revision: 102249
Last Changed Date: 2015-01-16 13:00:05 -0800 (Fri, 16 Jan 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: gdsfmt
Version: 1.2.2
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/gdsfmt_1.2.2.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch gdsfmt_1.2.2.tar.gz && rm gdsfmt_1.2.2.tar.gz
StartedAt: 2015-04-09 17:22:20 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:29:23 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 423.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/gdsfmt_1.2.2.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch gdsfmt_1.2.2.tar.gz && rm gdsfmt_1.2.2.tar.gz
###
##############################################################################
##############################################################################


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100  372k  100  372k    0     0  29.4M      0 --:--:-- --:--:-- --:--:-- 72.8M

install for i386

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'gdsfmt' ...
files 'COPYING', 'src/CoreArray.cpp', 'src/CoreArray.h', 'src/CoreDEF.h', 'src/R_GDS.h', 'src/R_GDS2.h', 'src/R_GDS_CPP.h', 'src/dAllocator.cpp', 'src/dAllocator.h', 'src/dAny.cpp', 'src/dAny.h', 'src/dBase.cpp', 'src/dBase.h', 'src/dBit.h', 'src/dBitGDS.cpp', 'src/dBitGDS.h', 'src/dEndian.cpp', 'src/dEndian.h', 'src/dFile.cpp', 'src/dFile.h', 'src/dParallel.cpp', 'src/dParallel.h', 'src/dParallel_Ext.c', 'src/dPlatform.cpp', 'src/dPlatform.h', 'src/dSerial.cpp', 'src/dSerial.h', 'src/dStrGDS.h', 'src/dStream.cpp', 'src/dStream.h', 'src/dString.h', 'src/dStruct.cpp', 'src/dStruct.h', 'src/dTrait.h', 'src/dType.h' are missing
files 'DESCRIPTION', 'NAMESPACE', 'NEWS', 'R/gdsfmt-main.r', 'README.md', 'inst/CITATION', 'man/add.gdsn.Rd', 'man/addfile.gdsn.Rd', 'man/addfolder.gdsn.Rd', 'man/append.gdsn.Rd', 'man/apply.gdsn.Rd', 'man/assign.gdsn.Rd', 'man/cache.gdsn.Rd', 'man/cleanup.gds.Rd', 'man/closefn.gds.Rd', 'man/clusterApply.gdsn.Rd', 'man/cnt.gdsn.Rd', 'man/compression.gdsn.Rd', 'man/createfn.gds.Rd', 'man/delete.attr.gdsn.Rd', 'man/delete.gdsn.Rd', 'man/diagnosis.gds.Rd', 'man/gds.class.Rd', 'man/gdsfmt-package.Rd', 'man/gdsn.class.Rd', 'man/get.attr.gdsn.Rd', 'man/getfile.gdsn.Rd', 'man/index.gdsn.Rd', 'man/is.element.gdsn.Rd', 'man/lasterr.gds.Rd', 'man/ls.gdsn.Rd', 'man/moveto.gdsn.Rd', 'man/name.gdsn.Rd', 'man/objdesp.gdsn.Rd', 'man/openfn.gds.Rd', 'man/print.gds.class.Rd', 'man/print.gdsn.class.Rd', 'man/put.attr.gdsn.Rd', 'man/read.gdsn.Rd', 'man/readex.gdsn.Rd', 'man/readmode.gdsn.Rd', 'man/rename.gdsn.Rd', 'man/setdim.gdsn.Rd', 'man/showfile.gds.Rd', 'man/sync.gds.Rd', 'man/write.gdsn.Rd', 'src/CoreGDS.cpp', 'src/CoreGDS.h', 'src/Makevars', 'src/Makevars.win', 'src/R_CoreArray.cpp', 'src/gdsfmt.cpp', 'tests/runTests.R' have the wrong MD5 checksums
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreGDS.cpp -o CoreGDS.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c R_CoreArray.cpp -o R_CoreArray.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c gdsfmt.cpp -o gdsfmt.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/adler32.c -o ZLIB/adler32.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/compress.c -o ZLIB/compress.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/crc32.c -o ZLIB/crc32.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/deflate.c -o ZLIB/deflate.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/infback.c -o ZLIB/infback.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inffast.c -o ZLIB/inffast.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inflate.c -o ZLIB/inflate.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inftrees.c -o ZLIB/inftrees.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/trees.c -o ZLIB/trees.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/uncompr.c -o ZLIB/uncompr.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/zutil.c -o ZLIB/zutil.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4.c -o LZ4/lz4.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c LZ4/xxhash.c -o LZ4/xxhash.o
g++ -m32 -shared -s -static-libgcc -o gdsfmt.dll tmp.def CoreGDS.o R_CoreArray.o gdsfmt.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'gdsfmt' ...
files 'COPYING', 'src/CoreArray.cpp', 'src/CoreArray.h', 'src/CoreDEF.h', 'src/R_GDS.h', 'src/R_GDS2.h', 'src/R_GDS_CPP.h', 'src/dAllocator.cpp', 'src/dAllocator.h', 'src/dAny.cpp', 'src/dAny.h', 'src/dBase.cpp', 'src/dBase.h', 'src/dBit.h', 'src/dBitGDS.cpp', 'src/dBitGDS.h', 'src/dEndian.cpp', 'src/dEndian.h', 'src/dFile.cpp', 'src/dFile.h', 'src/dParallel.cpp', 'src/dParallel.h', 'src/dParallel_Ext.c', 'src/dPlatform.cpp', 'src/dPlatform.h', 'src/dSerial.cpp', 'src/dSerial.h', 'src/dStrGDS.h', 'src/dStream.cpp', 'src/dStream.h', 'src/dString.h', 'src/dStruct.cpp', 'src/dStruct.h', 'src/dTrait.h', 'src/dType.h' are missing
files 'DESCRIPTION', 'NAMESPACE', 'NEWS', 'R/gdsfmt-main.r', 'README.md', 'inst/CITATION', 'man/add.gdsn.Rd', 'man/addfile.gdsn.Rd', 'man/addfolder.gdsn.Rd', 'man/append.gdsn.Rd', 'man/apply.gdsn.Rd', 'man/assign.gdsn.Rd', 'man/cache.gdsn.Rd', 'man/cleanup.gds.Rd', 'man/closefn.gds.Rd', 'man/clusterApply.gdsn.Rd', 'man/cnt.gdsn.Rd', 'man/compression.gdsn.Rd', 'man/createfn.gds.Rd', 'man/delete.attr.gdsn.Rd', 'man/delete.gdsn.Rd', 'man/diagnosis.gds.Rd', 'man/gds.class.Rd', 'man/gdsfmt-package.Rd', 'man/gdsn.class.Rd', 'man/get.attr.gdsn.Rd', 'man/getfile.gdsn.Rd', 'man/index.gdsn.Rd', 'man/is.element.gdsn.Rd', 'man/lasterr.gds.Rd', 'man/ls.gdsn.Rd', 'man/moveto.gdsn.Rd', 'man/name.gdsn.Rd', 'man/objdesp.gdsn.Rd', 'man/openfn.gds.Rd', 'man/print.gds.class.Rd', 'man/print.gdsn.class.Rd', 'man/put.attr.gdsn.Rd', 'man/read.gdsn.Rd', 'man/readex.gdsn.Rd', 'man/readmode.gdsn.Rd', 'man/rename.gdsn.Rd', 'man/setdim.gdsn.Rd', 'man/showfile.gds.Rd', 'man/sync.gds.Rd', 'man/write.gdsn.Rd', 'src/CoreGDS.cpp', 'src/CoreGDS.h', 'src/Makevars', 'src/Makevars.win', 'src/R_CoreArray.cpp', 'src/gdsfmt.cpp', 'tests/runTests.R' have the wrong MD5 checksums
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreGDS.cpp -o CoreGDS.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c R_CoreArray.cpp -o R_CoreArray.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c gdsfmt.cpp -o gdsfmt.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/adler32.c -o ZLIB/adler32.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/compress.c -o ZLIB/compress.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/crc32.c -o ZLIB/crc32.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/deflate.c -o ZLIB/deflate.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/infback.c -o ZLIB/infback.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inffast.c -o ZLIB/inffast.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inflate.c -o ZLIB/inflate.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/inftrees.c -o ZLIB/inftrees.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/trees.c -o ZLIB/trees.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/uncompr.c -o ZLIB/uncompr.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ZLIB/zutil.c -o ZLIB/zutil.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4.c -o LZ4/lz4.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LZ4/xxhash.c -o LZ4/xxhash.o
g++ -m64 -shared -s -static-libgcc -o gdsfmt.dll tmp.def CoreGDS.o R_CoreArray.o gdsfmt.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/libs/x64
** testing if installed package can be loaded
* DONE (gdsfmt)