| Back to the "Multiple platform build/check report" | A B C D E F G H I J K L M N O P Q [R] S T U V W X Y Z |
| Package 380/479 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| RCytoscape 1.3.2 Paul Shannon
| wilson2 | Linux (openSUSE 11.4) / x86_64 | ERROR | skipped | |||||
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped | |||||
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ ERROR ] | OK | |||||
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | TIMEOUT | ERROR | |||||
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: RCytoscape |
| Version: 1.3.2 |
| Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RCytoscape_1.3.2.tar.gz |
| StartedAt: 2011-07-07 05:57:10 -0700 (Thu, 07 Jul 2011) |
| EndedAt: 2011-07-07 06:03:51 -0700 (Thu, 07 Jul 2011) |
| EllapsedTime: 400.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: RCytoscape.Rcheck |
| Warnings: NA |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/RCytoscape.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCytoscape/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCytoscape' version '1.3.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RCytoscape' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'RCytoscape-Ex.R' failed
The error most likely occurred in:
> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: setDefaultNodeSize
> ### Title: setDefaultNodeSize
> ### Aliases: setDefaultNodeSize
> ### setDefaultNodeSize,CytoscapeConnectionClass-method
> ### Keywords: graph
>
> ### ** Examples
>
> cw <- new.CytoscapeWindow ('setDefaultNodeSize.test', graph=makeSimpleGraph())
> displayGraph (cw)
entering RCytoscape::displayGraph
sending 3 nodes
sending 3 edges
adding node attributes...
[1] "type"
[1] "lfc"
[1] "label"
[1] "count"
adding edge attributes...
[1] "edgeType"
entering setEdgeAttributesDirect, edgeType, with 3 names and 3 values
[1] "score"
entering setEdgeAttributesDirect, score, with 3 names and 3 values
[1] "misc"
entering setEdgeAttributesDirect, misc, with 3 names and 3 values
edgeType score misc
TRUE TRUE TRUE
> redraw (cw)
Error in convertToR(xmlParse(node, asText = TRUE)) :
faultCode: 1001 faultString: Network 77 not found
Calls: redraw ... convertToR -> convertToR -> convertToR -> convertToR
Execution halted
RCytoscape.Rcheck/00install.out:
* installing *source* package 'RCytoscape' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... *** tangling vignette sources ... 'RCytoscape.Rnw' ** testing if installed package can be loaded * DONE (RCytoscape)
RCytoscape.Rcheck/RCytoscape-Ex.timings:
| name | user | system | elapsed | |
| CytoscapeConnection | 0.23 | 0.06 | 0.90 | |
| CytoscapeConnectionClass-class | 0.02 | 0.00 | 0.02 | |
| CytoscapeWindow | 0.06 | 0.00 | 0.09 | |
| CytoscapeWindowClass-class | 0.10 | 0.00 | 0.11 | |
| addCyEdge | 0.30 | 0.00 | 6.75 | |
| addCyNode | 0.26 | 0.00 | 6.64 | |
| addGraphToGraph | 0.41 | 0.00 | 9.12 | |
| clearMsg | 0 | 0 | 0 | |
| clearSelection | 0.30 | 0.00 | 6.41 | |
| copyVisualStyle | 0.36 | 0.01 | 7.53 | |
| createWindowFromSelection | 1.20 | 0.13 | 8.20 | |
| cy2.edge.names | 0.02 | 0.00 | 0.02 | |
| deleteAllWindows | 0.31 | 0.01 | 1.78 | |
| deleteEdgeAttribute | 0.30 | 0.00 | 6.67 | |
| deleteNodeAttribute | 0.28 | 0.02 | 6.59 | |
| deleteSelectedEdges | 0.25 | 0.06 | 6.77 | |
| deleteSelectedNodes | 0.29 | 0.02 | 6.65 | |
| deleteWindow | 0.33 | 0.00 | 6.89 | |
| displayGraph | 0.23 | 0.01 | 6.66 | |
| dockPanel | 0.02 | 0.00 | 0.06 | |
| eda | 0.01 | 0.00 | 0.01 | |
| eda.names | 0.02 | 0.00 | 0.02 | |
| existing.CytoscapeWindow | 0.90 | 0.03 | 7.44 | |
| fitContent | 0.25 | 0.02 | 6.69 | |
| fitSelectedContent | 0.30 | 0.05 | 6.79 | |
| floatPanel | 0.00 | 0.01 | 0.10 | |
| getAllEdgeAttributes | 0.28 | 0.00 | 6.65 | |
| getAllEdges | 0.10 | 0.00 | 0.16 | |
| getAllNodeAttributes | 0.28 | 0.02 | 6.67 | |
| getAllNodes | 0.09 | 0.00 | 0.16 | |
| getArrowShapes | 0.00 | 0.00 | 0.01 | |
| getAttributeClassNames | 0 | 0 | 0 | |
| getCenter | 0.38 | 0.00 | 6.71 | |
| getDefaultBackgroundColor | 0 | 0 | 0 | |
| getDefaultEdgeReverseSelectionColor | 0.01 | 0.00 | 0.01 | |
| getDefaultEdgeSelectionColor | 0.02 | 0.00 | 0.03 | |
| getDefaultNodeReverseSelectionColor | 0.01 | 0.00 | 0.02 | |
| getDefaultNodeSelectionColor | 0.02 | 0.00 | 0.01 | |
| getDirectlyModifiableVisualProperties | 0.01 | 0.00 | 0.02 | |
| getEdgeAttribute | 0.44 | 0.01 | 6.80 | |
| getEdgeAttributeNames | 0.00 | 0.00 | 0.01 | |
| getEdgeCount | 0.3 | 0.0 | 6.7 | |
| getFirstNeighbors | 0.34 | 0.00 | 6.66 | |
| getGraph | 0.13 | 0.00 | 0.14 | |
| getGraphFromCyWindow | 1.03 | 0.08 | 7.61 | |
| getLayoutNameMapping | 0.03 | 0.00 | 0.03 | |
| getLayoutNames | 0.02 | 0.00 | 0.02 | |
| getLayoutPropertyNames | 0.01 | 0.00 | 0.01 | |
| getLayoutPropertyType | 0.08 | 0.02 | 0.14 | |
| getLayoutPropertyValue | 0.03 | 0.00 | 0.18 | |
| getLineStyles | 0.02 | 0.00 | 0.03 | |
| getNodeAttribute | 0.29 | 0.00 | 6.68 | |
| getNodeAttributeNames | 0.02 | 0.00 | 0.02 | |
| getNodeCount | 0.30 | 0.01 | 6.64 | |
| getNodeShapes | 0.01 | 0.00 | 0.02 | |
| getPosition | 0.31 | 0.00 | 6.56 | |
| getSelectedEdgeCount | 0.32 | 0.02 | 6.66 | |
| getSelectedEdges | 0.28 | 0.00 | 6.59 | |
| getSelectedNodeCount | 0.33 | 0.01 | 6.73 | |
| getSelectedNodes | 0.36 | 0.05 | 5.72 | |
| getViewCoordinates | 0.30 | 0.00 | 6.62 | |
| getVisualStyleNames | 0.01 | 0.00 | 0.03 | |
| getWindowCount | 0.25 | 0.00 | 0.35 | |
| getWindowID | 0.38 | 0.00 | 6.47 | |
| getWindowList | 0.09 | 0.00 | 0.09 | |
| getZoom | 0.35 | 0.00 | 6.66 | |
| hideAllPanels | 0.28 | 0.00 | 0.40 | |
| hideNodes | 0.20 | 0.00 | 0.27 | |
| hidePanel | 0.03 | 0.00 | 0.03 | |
| hideSelectedEdges | 0.17 | 0.00 | 0.53 | |
| hideSelectedNodes | 0.22 | 0.02 | 0.55 | |
| initEdgeAttribute | 0 | 0 | 0 | |
| initNodeAttribute | 0 | 0 | 0 | |
| invertEdgeSelection | 0.16 | 0.00 | 0.23 | |
| invertNodeSelection | 0.20 | 0.00 | 0.25 | |
| layout | 0.33 | 0.01 | 6.63 | |
| lockNodeDimensions | 0.37 | 0.00 | 6.81 | |
| makeRandomGraph | 0.02 | 0.00 | 0.02 | |
| makeSimpleGraph | 0.03 | 0.00 | 0.03 | |
| msg | 0.00 | 0.00 | 0.01 | |
| new.CytoscapeWindow | 0.14 | 0.02 | 0.21 | |
| noa | 0.02 | 0.00 | 0.01 | |
| noa.names | 0.01 | 0.00 | 0.02 | |
| ping | 0.02 | 0.00 | 0.01 | |
| raiseWindow | 0.16 | 0.00 | 0.19 | |
| redraw | 0.21 | 0.00 | 0.25 | |
| saveImage | 0.35 | 0.02 | 6.75 | |
| saveNetwork | 0.41 | 0.00 | 6.81 | |
| selectEdges | 0.33 | 0.03 | 6.75 | |
| selectFirstNeighborsOfSelectedNodes | 0.50 | 0.03 | 6.88 | |
| selectNodes | 0.23 | 0.00 | 0.28 | |
| sendEdges | 0.22 | 0.00 | 2.25 | |
| sendNodes | 0.17 | 0.02 | 0.28 | |
| setCenter | 0.38 | 0.01 | 13.03 | |
| setDefaultBackgroundColor | 0 | 0 | 0 | |
| setDefaultEdgeColor | 0.42 | 0.00 | 6.69 | |
| setDefaultEdgeLineWidth | 0.37 | 0.00 | 6.83 | |
| setDefaultEdgeReverseSelectionColor | 0.00 | 0.00 | 0.01 | |
| setDefaultEdgeSelectionColor | 0.02 | 0.00 | 0.02 | |
| setDefaultNodeBorderColor | 0.36 | 0.00 | 6.78 | |
| setDefaultNodeBorderWidth | 0.41 | 0.00 | 6.84 | |
| setDefaultNodeColor | 0.40 | 0.00 | 6.83 | |
| setDefaultNodeFontSize | 0.38 | 0.00 | 6.72 | |
| setDefaultNodeLabelColor | 0.40 | 0.03 | 6.78 | |
| setDefaultNodeReverseSelectionColor | 0.00 | 0.00 | 0.02 | |
| setDefaultNodeSelectionColor | 0.02 | 0.00 | 0.01 | |
| setDefaultNodeShape | 0.39 | 0.00 | 6.78 | |