Package: PREDAsampledata

Version: 0.2.2

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings PREDAsampledata_0.2.2.tar.gz

StartedAt: 2011-10-19 01:16:04 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 01:17:22 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 77.9 seconds

RetCode: 1

Status:  ERROR

CheckDir: PREDAsampledata.Rcheck

Warnings: NA

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/PREDAsampledata.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK
* this is package ‘PREDAsampledata’ version ‘0.2.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘PREDAsampledata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 116.5Mb
  sub-directories of 1Mb or more:
    sampledata  20.7Mb
    data        95.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package "PREDA"
  Calls: <Anonymous> ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘PREDAsampledata-Ex.R’ failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GEanalysisResults
> ### Title: RCC gene expression sample dataset - PREDA analysis results
> ### Aliases: GEanalysisResults
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(GEanalysisResults)
> str(GEanalysisResults)
Loading required package: PREDA
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'PREDA'
Error in .requirePackage(package) : 
  unable to find required package "PREDA"
Calls: str ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted

* installing *source* package ‘PREDAsampledata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (PREDAsampledata)

name	user	system	elapsed
AffybatchRCC	12.452	0.292	12.816
ExpressionSetRCC	0.472	0.020	0.490