Package: ppiData

Version: 0.1.14

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings ppiData_0.1.14.tar.gz

StartedAt: 2010-11-11 16:31:23 -0800 (Thu, 11 Nov 2010)

EndedAt: 2010-11-11 16:32:40 -0800 (Thu, 11 Nov 2010)

EllapsedTime: 76.3 seconds

RetCode: 0

Status:  OK

CheckDir: ppiData.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-data-experiment/meat/ppiData.Rcheck'
* using R version 2.12.0 RC (2010-10-11 r53293)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'ppiData' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

name	user	system	elapsed
Cagney2001BPGraph	0.02	0.00	0.02
Gavin2002BPGraph	0	0	0
Gavin2006bPGraph	0.00	0.02	0.04
Hazbun2003BPGraph	0.00	0.00	0.03
Ho2002BPGraph	0.00	0.00	0.02
Ito2001BPGraph	0.00	0.00	0.05
ItoCore2001BPGraph	0	0	0
ItoFull2001BPGraph	0	0	0
Krogan2004BPGraph	0.01	0.00	0.02
Krogan2006BPGraph	0	0	0
Tong2002BPGraph	0.00	0.02	0.01
Uetz2000BPGraph1	0	0	0
Uetz2000BPGraph2	0	0	0
Zhao2005BPGraph	0.00	0.00	0.63
bpExperimentNames	0.00	0.00	0.02
collectIntactPPIData	13.16	0.03	13.18
createBPList	0.01	0.00	0.02
intActPPIData	0.00	0.00	0.04
map2Systematic	0	0	0
ppipred	0	0	0
sWAC2Sys	0.00	0.00	0.06
stochasticBaits	0.01	0.00	0.02
tableList	0	0	0
twTableAPMS	0.00	0.00	0.03
twTableY2H	0.00	0.01	0.03
viableProteins	0.02	0.00	0.02
y2h	0	0	0
y2hSysGW	0.00	0.00	0.05