Package: ppiData

Version: 0.1.14

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ppiData_0.1.14.tar.gz

StartedAt: 2011-02-27 15:06:10 -0800 (Sun, 27 Feb 2011)

EndedAt: 2011-02-27 15:07:49 -0800 (Sun, 27 Feb 2011)

EllapsedTime: 99.4 seconds

RetCode: 0

Status:  OK

CheckDir: ppiData.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-data-experiment/meat/ppiData.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ppiData/DESCRIPTION’ ... OK
* this is package ‘ppiData’ version ‘0.1.14’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ppiData’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘ppiData’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

name	user	system	elapsed
Cagney2001BPGraph	0.029	0.001	0.031
Gavin2002BPGraph	0.002	0.001	0.003
Gavin2006bPGraph	0.002	0.001	0.003
Hazbun2003BPGraph	0.002	0.000	0.003
Ho2002BPGraph	0.002	0.000	0.003
Ito2001BPGraph	0.002	0.001	0.003
ItoCore2001BPGraph	0.002	0.001	0.003
ItoFull2001BPGraph	0.002	0.000	0.003
Krogan2004BPGraph	0.002	0.001	0.003
Krogan2006BPGraph	0.002	0.001	0.003
Tong2002BPGraph	0.002	0.001	0.002
Uetz2000BPGraph1	0.002	0.000	0.002
Uetz2000BPGraph2	0.002	0.000	0.003
Zhao2005BPGraph	0.004	0.001	0.004
bpExperimentNames	0.005	0.009	0.014
collectIntactPPIData	21.406	6.427	28.004
createBPList	0.019	0.001	0.020
intActPPIData	0.004	0.001	0.015
map2Systematic	0.004	0.001	0.005
ppipred	0.001	0.000	0.003
sWAC2Sys	0.002	0.000	0.003
stochasticBaits	0.007	0.001	0.008
tableList	0.002	0.000	0.003
twTableAPMS	0.002	0.000	0.002
twTableY2H	0.002	0.001	0.002
viableProteins	0.016	0.002	0.018
y2h	0.002	0.001	0.003
y2hSysGW	0.017	0.002	0.019